View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_high_23 (Length: 286)
Name: NF12538_high_23
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 42577657 - 42577398
Alignment:
| Q |
16 |
aaaacaaatcaagaagcacctaaaaagtattaaccgaaatcagagacaaaaatcgatagaccttaacatcaatcagaccatctacgaacatgccaatgtt |
115 |
Q |
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| T |
42577657 |
aaaacaaatcaagaagcacctaaaaagtattaaccgaaatcagagacaaaaatcgatagaccttaacatcaatccgaccatctacgaacatgccaatgtt |
42577558 |
T |
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| Q |
116 |
atcgttggtgaaagcactctggctattaagtttaagagtttctatccatagcttatggacacaagcaattttatcaacaaaagggatcaaaaaatggacg |
215 |
Q |
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| T |
42577557 |
atcgttggtgaaagcactctggctattaagtttaagagtttctatccatagcttatggacgcaagcaattttatcaacaaaagggatcaaaaaatggacg |
42577458 |
T |
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| Q |
216 |
cctgtaggaagagttttaaagtactttccgtatcgctcaatgatatacactctctgctcc |
275 |
Q |
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| T |
42577457 |
ccggtaggaagagttttaaagtactttccatatcgctcaatgatatacactgtctgctcc |
42577398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 42570471 - 42570213
Alignment:
| Q |
16 |
aaaacaaatcaagaagcacctaaaaagtattaaccgaaatcagagacaaaaa--tcgatagaccttaacatcaatcagaccatctacgaacatgccaatg |
113 |
Q |
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| T |
42570471 |
aaaacaaatcaacaagcacctaaaaagtattaactggaattagagataaaaaattcgatacaccttaacatcaatgcaaccacccacgaacatgctgatg |
42570372 |
T |
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| Q |
114 |
ttatcgttggtgaaagcactctggctattaagttta-agagtttctatccatagcttatggacacaagcaattttatcaacaaaagggatcaaaaaatgg |
212 |
Q |
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| T |
42570371 |
ttatccttggtgaaagcaggcaggcgatcaagaatagagggtttttttctatagatcatggacgcgagcaattttatcaacaaaagggttcaaaaaatgg |
42570272 |
T |
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| Q |
213 |
acgcctgtaggaagagttttaaagtactttccgtatcgctcaatgatatacactctctg |
271 |
Q |
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| T |
42570271 |
atgccggtaggaagagatttaaagtattttccatatctctcgatgatatatactgtctg |
42570213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 275
Target Start/End: Complemental strand, 42594206 - 42594084
Alignment:
| Q |
153 |
gtttctatccatagcttatggacacaagcaattttatcaacaaaagggatcaaaaaatggacgcctgtaggaagagttttaaagtactttccgtatcgct |
252 |
Q |
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||||||||||||| ||||||||| | | ||| || ||| |||||||| |||||||||||||||||||||| ||||| || ||||| |||||| ||| || |
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| T |
42594206 |
gtttctatccatatcttatggacgcgaacaacttcatcgacaaaaggattcaaaaaatggacgcctgtaggtagagtcttgaagtattttccgaatctct |
42594107 |
T |
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| Q |
253 |
caatgatatacactctctgctcc |
275 |
Q |
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||| ||||| ||| |||||||| |
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| T |
42594106 |
caacaatatatactgtctgctcc |
42594084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 42572618 - 42572578
Alignment:
| Q |
222 |
ggaagagttttaaagtactttccgtatcgctcaatgatata |
262 |
Q |
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| T |
42572618 |
ggaagagttttaaagtattttccatatcgctcaatgatata |
42572578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 42607422 - 42607344
Alignment:
| Q |
178 |
aagcaattttatcaacaaaagggatcaaaaaatggacgcctgtaggaagagttttaaagtactttccgtatcgctcaat |
256 |
Q |
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|||||||| ||||||||| ||||| ||||||||||| || | ||||||||| |||| ||| ||||| |||||||||| |
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| T |
42607422 |
aagcaattctatcaacaagagggaccaaaaaatggattccagaaggaagagtcttaacgtattttccaaatcgctcaat |
42607344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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