View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_high_31 (Length: 228)
Name: NF12538_high_31
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 34023176 - 34023373
Alignment:
| Q |
18 |
cataatgttgggcagcgaaaatgtgcactaaaaccaaagatttgctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgcaagt |
117 |
Q |
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| T |
34023176 |
cataatgttaggcagtgaaaatgtgcactaaaaccaaagatttgctatgttcatgaagttgtaaaatggaattatagatagagttgtgaaagttgcaagt |
34023275 |
T |
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| Q |
118 |
aagctgacaacgagttaaataatgataatattagtggacagattcatgtattcaatgaataactctatcactttagttcattgattagagttcatctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
34023276 |
aagctgacaacgagttaaataatgataatattagtggacagattcatgtattcaatgaataagtctatcactttagttcattaattagagttcatctc |
34023373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 34030427 - 34030625
Alignment:
| Q |
18 |
cataatgttgggcagcgaaaatgtgcactaaaacc-aaagatttgctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgcaag |
116 |
Q |
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||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34030427 |
cataatgttaggcagtgaaaatgtgcactaaaaactaaagatttgctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgcaaa |
34030526 |
T |
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| Q |
117 |
taagctgacaacgagttaaataatgataatattagtggacagattcatgtattcaatgaataactctatcactttagttcattgattagagttcatctc |
215 |
Q |
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|| |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |
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| T |
34030527 |
taggctgacaatgagttaagtaaagataatattagtggacagattcatgtattcaatgaatatgtctctcactttagttcattgattggagttcatctc |
34030625 |
T |
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