View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_high_8 (Length: 410)
Name: NF12538_high_8
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 10512172 - 10512554
Alignment:
| Q |
1 |
agactcaggtgtccatggatcagaaagcaatttaatttttgctggaatctcaaatttctccaaacgaactttctttgcttcctgcagatatttcataaac |
100 |
Q |
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| T |
10512172 |
agactcaggtgtccatggatcagaaagcaatttaatttttgctggaatctcaaatttctccaaacgaactttctttgcttcctgcagatatttcataaac |
10512271 |
T |
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| Q |
101 |
tacaaattaatattcatcattgcaataattaaggcaacaaatacattgcaggttaattgagctcttaagagcagctccaaagacagtatttagagagtcc |
200 |
Q |
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| T |
10512272 |
tacaaattaatattcatcattgcaataattaaggcaacaaatacattgcaggttaattgag--------agcagctccaaagacagtatttagagagtct |
10512363 |
T |
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| Q |
201 |
ttaagttcaaaatatgcattcttaacgaattccaccgttgaagaagattgacgtgggcgactacttacaagtacaatagcttattgaagcaacttctcct |
300 |
Q |
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| T |
10512364 |
ttaagttcaaaatatgcattcttaacgaattccaccgttgaagaagattgacgtgggcgactacttacaattacgatagcttattgaagcaacttcttct |
10512463 |
T |
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| Q |
301 |
taacagtatgttagtagtaggatccatcatggattcttaagggtaggactattagaccaaaagacaagtgagttatttggagtcaacttaa |
391 |
Q |
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| T |
10512464 |
taacagtatgttagtagtaggatccatcatggattcttaagggtaggactattagaccaaaagacaagtgagttatttggagtcaacttaa |
10512554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 39887660 - 39887571
Alignment:
| Q |
4 |
ctcaggtgtccatggatcagaaagcaatttaatttttgctggaatctcaaatttctccaaacgaactttctttgcttcctgcagatattt |
93 |
Q |
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| T |
39887660 |
ctcaggagtccatgggtcagaaagcaatttaagttttgcaggaatttcaaatttttccagacgacccttctttgcttcctgcaaatattt |
39887571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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