View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12538_low_1 (Length: 796)

Name: NF12538_low_1
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12538_low_1
NF12538_low_1
[»] chr4 (5 HSPs)
chr4 (170-634)||(43804189-43804646)
chr4 (17-136)||(43804681-43804801)
chr4 (701-787)||(43804033-43804119)
chr4 (270-330)||(19453965-19454025)
chr4 (281-384)||(7057351-7057454)
[»] chr5 (3 HSPs)
chr5 (284-392)||(18900577-18900683)
chr5 (172-226)||(32117752-32117805)
chr5 (342-392)||(39646259-39646309)
[»] chr2 (2 HSPs)
chr2 (322-392)||(10582320-10582390)
chr2 (347-392)||(10931750-10931795)
[»] chr8 (1 HSPs)
chr8 (290-376)||(9573695-9573781)
[»] chr6 (5 HSPs)
chr6 (350-392)||(24762296-24762338)
chr6 (180-224)||(6076050-6076093)
chr6 (274-318)||(30863913-30863957)
chr6 (347-376)||(12229585-12229614)
chr6 (347-448)||(30863965-30864065)
[»] chr3 (1 HSPs)
chr3 (317-392)||(25181655-25181733)
[»] chr1 (2 HSPs)
chr1 (348-387)||(49520017-49520056)
chr1 (281-387)||(18926142-18926248)
[»] chr7 (1 HSPs)
chr7 (322-392)||(8688186-8688255)


Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 170 - 634
Target Start/End: Complemental strand, 43804646 - 43804189
Alignment:
Q  170 cgctaacctcaataattcaagattctaagtcatcaattaaatgacaaaagaaaagtgattggtcatacaaaattaacaaacacagttgtttgctacaccg 269  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43804646 cgctaacctcaataattcaagattctaagtcatcaattaaaggacaaaagaaaagtgattggtcatacaaaattaacaaacacagttgtttgctacaccg 43804547  T
Q  270 aaaataggtaatgattcattagaatgaatcagaattcatcctaatgaatcaagattcatcaaagtggatcatgatttaagatgagattcatgttcaaaat 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43804546 aaaataggtaatgattcattagaatgaatcagaattcatcctaatgaatcaagattcatcaaagtggatcatgatttaagatgagattcatgttcaaaat 43804447  T
Q  370 agatacaaactagagattcatattattggagttcatttttgtaacggatcgagagacaactcacatgtattgtatgataacctagcatccaccatgtcta 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43804446 agatacaaactagagattcatattattggagttcatttttgtaacggatcgagagacaactcacatgtattgtatgataacctagcatccaccatgtcta 43804347  T
Q  470 ctcccacactgccctcccacccttcattgttgctgccacttgccacttgccaccatcacctaagacctttacagttgccacataagtatcgttcaccact 569  Q
    ||||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  43804346 ctcccacactgccctgccacccttcattgttgctgccacttg-------ccaccatcacctaagacctttacagttgccacataagtatcgttcaccacc 43804254  T
Q  570 gtgtcttcccccatcactcttcactctagcagtttatctgttctcaaattaatattactaaatgg 634  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43804253 gtgtcttcccccatcactcttcactctagcagtttatctgttctcaaattaatattactaaatgg 43804189  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 43804801 - 43804681
Alignment:
Q  17 aagtttagcctgaaacaactgtaaattactactctaagtctaagggtgtatttcattacaacttta-aaaactgcctttcgtccttgnnnnnnntgcttg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       ||||||    
T  43804801 aagtttagcctgaaacaactgtaaattactactctaagtctaagggtgtatttcattacaactttaaaaaactgcctttcgtccttgaaaaaaatgcttg 43804702  T
Q  116 ttgaattatttatcatgatgc 136  Q
    ||||||||||||| |||||||    
T  43804701 ttgaattatttattatgatgc 43804681  T

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Target: chr4; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 701 - 787
Target Start/End: Complemental strand, 43804119 - 43804033
Alignment:
Q  701 aataatcaagaccacaatcaaacaaacataattttcttcttggagacatcatgatctactattacaaatttgatatttctgtctctg 787  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43804119 aataatcaagaccacaatcaaacaaacataattttcttcttggagacatcatgatctactattacaaatttgatatttctgtctctg 43804033  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 19454025 - 19453965
Alignment:
Q  270 aaaataggtaatgattcattagaatgaatcagaattcatcctaatgaatcaagattcatca 330  Q
    |||||||||| ||||||||||||||||||||  ||||||| || ||||||  |||||||||    
T  19454025 aaaataggtagtgattcattagaatgaatcaagattcatcatagtgaatcgggattcatca 19453965  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 384
Target Start/End: Complemental strand, 7057454 - 7057351
Alignment:
Q  281 tgattcattagaatgaatcagaattcatcctaatgaatcaagattcatcaaagtggatcatgatttaagatgagattcatgttcaaaatagatacaaact 380  Q
    |||||||| |||| || |||||||||||| |  |||||| |||||||||  | || |||  || | |||||||||||||| || |||||||||| |||||    
T  7057454 tgattcataagaacgattcagaattcatcgttgtgaatcgagattcatcttaatgtatcgggactcaagatgagattcatatttaaaatagatataaact 7057355  T
Q  381 agag 384  Q
    ||||    
T  7057354 agag 7057351  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 284 - 392
Target Start/End: Complemental strand, 18900683 - 18900577
Alignment:
Q  284 ttcattagaatgaatcagaattcatcctaatgaatcaagattcatcaaagtggatcatgatttaagatgagattcatgttcaaaatagatacaaactaga 383  Q
    ||||||| ||||| |||||||||||| || |||||| |||||||||| | | ||||| |||| |||||||||||||||||  ||||||||||| ||||||    
T  18900683 ttcattacaatgagtcagaattcatcatagtgaatcgagattcatcataat-gatcacgattaaagatgagattcatgtt-gaaatagatacacactaga 18900586  T
Q  384 gattcatat 392  Q
    |||||||||    
T  18900585 gattcatat 18900577  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 32117805 - 32117752
Alignment:
Q  172 ctaacctcaataattcaagattctaagtcatcaattaaatgacaaaagaaaagtg 226  Q
    ||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||    
T  32117805 ctaacctcaatgattcaagattc-aagtcataaatcaaatgacaaaagaaaagtg 32117752  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 39646309 - 39646259
Alignment:
Q  342 gatttaagatgagattcatgttcaaaatagatacaaactagagattcatat 392  Q
    |||| |||||||||||||||||||| ||||||||| |||| | ||||||||    
T  39646309 gattcaagatgagattcatgttcaatatagatacacactaaaaattcatat 39646259  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 10582320 - 10582390
Alignment:
Q  322 gattcatcaaagtggatcatgatttaagatgagattcatgttcaaaatagatacaaactagagattcatat 392  Q
    ||||||||| || | |||| || | |||||||||||||||||||||||||||||| |||||||||||||||    
T  10582320 gattcatcatagagaatcaggactcaagatgagattcatgttcaaaatagatacacactagagattcatat 10582390  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 10931750 - 10931795
Alignment:
Q  347 aagatgagattcatgttcaaaatagatacaaactagagattcatat 392  Q
    ||||||||||||||||||||| |||  ||| |||||||||||||||    
T  10931750 aagatgagattcatgttcaaattaggcacacactagagattcatat 10931795  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 376
Target Start/End: Original strand, 9573695 - 9573781
Alignment:
Q  290 agaatgaatcagaattcatcctaatgaatcaagattcatcaaagtggatcatgatttaagatgagattcatgttcaaaatagataca 376  Q
    ||||| |||||||||||| |  | |||||| |||||||||| | |  ||||||||| |||||||||||||||| |||| ||||||||    
T  9573695 agaataaatcagaattcaccacagtgaatccagattcatcataataaatcatgattcaagatgagattcatgtccaaagtagataca 9573781  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 350 - 392
Target Start/End: Complemental strand, 24762338 - 24762296
Alignment:
Q  350 atgagattcatgttcaaaatagatacaaactagagattcatat 392  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  24762338 atgagattcatgttcgaaatagatacacactagagattcatat 24762296  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 6076050 - 6076093
Alignment:
Q  180 aataattcaagattctaagtcatcaattaaatgacaaaagaaaag 224  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||    
T  6076050 aataattcaagattc-aagtcataaattaaatgacaaaagaaaag 6076093  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 30863913 - 30863957
Alignment:
Q  274 taggtaatgattcattagaatgaatcagaattcatcctaatgaat 318  Q
    ||||||||||||||||||||||||||| |||||||| || |||||    
T  30863913 taggtaatgattcattagaatgaatcacaattcatcatagtgaat 30863957  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 376
Target Start/End: Original strand, 12229585 - 12229614
Alignment:
Q  347 aagatgagattcatgttcaaaatagataca 376  Q
    ||||||||||||||||||||||||||||||    
T  12229585 aagatgagattcatgttcaaaatagataca 12229614  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 448
Target Start/End: Original strand, 30863965 - 30864065
Alignment:
Q  347 aagatgagattcatgttcaaaatagatacaaactagagattcatattattggagttcatttttgtaacggatcgagagacaactcacatgtattgtatga 446  Q
    |||||||||||||||| |||| |||||||| ||||||||||  |||   | ||||||||||| |||  | ||||||| || |||||||||||| ||| ||    
T  30863965 aagatgagattcatgtccaaa-tagatacacactagagatttgtatcgattgagttcattttagtattgaatcgagatacgactcacatgtatcgtaaga 30864063  T
Q  447 ta 448  Q
    ||    
T  30864064 ta 30864065  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 392
Target Start/End: Original strand, 25181655 - 25181733
Alignment:
Q  317 atcaagattcatcaaagtggatcatgatttaagatgagattcatgttcaaa---atagatacaaactagagattcatat 392  Q
    |||||||||||||| |||| |||  |||||||||||| |||||||| ||||   ||||||| | |||||||||||||||    
T  25181655 atcaagattcatcatagtgaatcgggatttaagatgatattcatgtccaaatagatagatatacactagagattcatat 25181733  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 387
Target Start/End: Original strand, 49520017 - 49520056
Alignment:
Q  348 agatgagattcatgttcaaaatagatacaaactagagatt 387  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  49520017 agatgagattcatgtccaaaatagatacacactagagatt 49520056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 281 - 387
Target Start/End: Complemental strand, 18926248 - 18926142
Alignment:
Q  281 tgattcattagaatgaatcagaattcatcctaatgaatcaagattcatcaaagtggatcatgatttaagatgagattcatgttcaaaatagatacaaact 380  Q
    |||||||||||||||||| || |||  |  |||||||||||||||| ||| | || |||| |||  || |||||| |||| | |||||||||||||  ||    
T  18926248 tgattcattagaatgaattaggatttttaataatgaatcaagattcttcataatgaatcaggatacaaaatgagactcatatccaaaatagatacactct 18926149  T
Q  381 agagatt 387  Q
    |||||||    
T  18926148 agagatt 18926142  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 8688255 - 8688186
Alignment:
Q  322 gattcatcaaagtggatcatgatttaagatgagattcatgttcaaaatagatacaaactagagattcatat 392  Q
    ||||||||| | || |||| |||| |||||||||||||||| | ||||||||||| | |||||||||||||    
T  8688255 gattcatcataatgaatcaggattcaagatgagattcatgtgc-aaatagatacacaatagagattcatat 8688186  T

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