View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_low_11 (Length: 351)
Name: NF12538_low_11
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 45149612 - 45149953
Alignment:
| Q |
1 |
aatctaatatactaagggatacatttcagaggtcacctcaattggacattttacggtaacttgattggtggagttattgtaaatgagctaatatggtgcc |
100 |
Q |
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| T |
45149612 |
aatctaatatactaagggatacatgtcagaggtcacctcaattggacattttacggtaacttgattggtggagttattgtaaatgagctaatatggtgcc |
45149711 |
T |
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| Q |
101 |
-------aagagtaagatctcattgtctcaaattcttttccacgaaatttcaacttaactctactaaattataatttagtgcccatcttctttcctaata |
193 |
Q |
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| T |
45149712 |
aactgccaagagtaagatctcattgtctcaaattcttttccacgaaatttcgacttaactctactaaattataatttagtgcccatcttctttcctaata |
45149811 |
T |
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| Q |
194 |
ttctctaaaagtgtctcaaaatttttacaactcaattaaaagtgatggtttttaaatgatgaactctttaaaatacaaatatgacatttacacgacatca |
293 |
Q |
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| T |
45149812 |
ttctctaaaagtgtctcaaaattttcacaactcaattaaaagtgatggtttttaaatgatgaactctttaaaatacaaatatgacatttacacgacatca |
45149911 |
T |
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| Q |
294 |
ctagtcttggatgaaatgagtcatatatttcagggttaatat |
335 |
Q |
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| T |
45149912 |
ctagtcttggatgaaatgagtcatatatttcagggttaatat |
45149953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 29236265 - 29236221
Alignment:
| Q |
34 |
cacctcaattggacattttacggtaacttgattggtggagttatt |
78 |
Q |
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| T |
29236265 |
cacctcaaatggacatttcccggtagcttgattggtggagttatt |
29236221 |
T |
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