View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_low_14 (Length: 342)
Name: NF12538_low_14
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 25070181 - 25069932
Alignment:
| Q |
1 |
atgacggaagactctaaatcagcaagtttggaagaaaatatgttgtaataaaaagtgaaaattgcaacattttttgaagacaaacacattcaccgaatta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25070181 |
atgacggaagactctaaatcagcaagtttggaagaaaatatgttgtaataaaaagtgaaaattgcaacattttttgaagacaaacacattcaccgaatta |
25070082 |
T |
|
| Q |
101 |
ccttaagagttctcgaagtgacagacaatgatttgatatttgcaatctcaaccagccagttgagtagaagcaaaggattttctccgccagttaaccacac |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25070081 |
ccttaagagttctcgaagtgactgacaatgatttgatattagcaatctcaaccagccagttgagtagaagcaaaggattttctgcgccagttaaccacac |
25069982 |
T |
|
| Q |
201 |
tcctacatcaagatttacatgatcgatacaagagagattgctattgctcg |
250 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25069981 |
tcctacatcaagatttacatgatcgatacaagagagattgctattgctcg |
25069932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 25128156 - 25127907
Alignment:
| Q |
1 |
atgacggaagactctaaatcagcaagtttggaagaaaatatgttgtaataaaaagtgaaaattgcaacattttttgaagacaaacacattcaccgaatta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25128156 |
atgacggaagactctaaatcagcaagtttggaagaaaatatgttgtaataaaaagtgaaaattgcaacattttttgaagacaaacacattcaccgaatta |
25128057 |
T |
|
| Q |
101 |
ccttaagagttctcgaagtgacagacaatgatttgatatttgcaatctcaaccagccagttgagtagaagcaaaggattttctccgccagttaaccacac |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25128056 |
ccttaagagttctcgaagtgactgacaatgatttgatattagcaatctcaaccagccagttgagtagaagcaaaggattttctgcgccagttaaccacac |
25127957 |
T |
|
| Q |
201 |
tcctacatcaagatttacatgatcgatacaagagagattgctattgctcg |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25127956 |
tcctacatcaagatttacatgatcgatacaagagagattgctattgctcg |
25127907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 2 - 331
Target Start/End: Complemental strand, 25216875 - 25216545
Alignment:
| Q |
2 |
tgacggaagactctaaatcagcaagtttggaagaaaa---tatgttgtaataaaaagtgaaaattgcaacattttttgaagacaaacacattcaccgaat |
98 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||||| |||||||||||||||||| |||||| | | ||||| | || ||||| | ||| | ||| |
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| T |
25216875 |
tgacagaagactctaaatcagcatatatggaagaaaaaattatgttgtaataaaaagttaaaattactaaattttctcaaaacaaata--ttcgctaaat |
25216778 |
T |
|
| Q |
99 |
taccttaagagttctcgaagtgacagacaatgatttgatatttgcaatctcaaccagccagttgagtagaagcaaaggattttctccgccagttaaccac |
198 |
Q |
| |
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||||||||| ||||| |||||||| ||||||||||| |||||| ||| ||||||||||||||||||||||| ||||||| ||| | ||||| |||| |
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| T |
25216777 |
taccttaagtgttcttgaagtgactgacaatgatttcatatttccaagctcaaccagccagttgagtagaaacaaaggagactctatgtaagttacccac |
25216678 |
T |
|
| Q |
199 |
actcctacatcaagatttacatgatcgatacaagagagattgctattgctcgcacagagtttctgaagaggaacatgcccacaataaacaaaggtacaaa |
298 |
Q |
| |
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| | |||||| |||||||||||| |||||| |||||||||| |||||||| |||| |||||||| | |||| ||| ||| | ||||||||||||||| | |
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| T |
25216677 |
atttctacattaagatttacatgttcgatagaagagagatttatattgctctcacaaagtttctgtaaaggatcatacccgcgataaacaaaggtacaga |
25216578 |
T |
|
| Q |
299 |
gacttggcgtggataactgaaatttcatctcag |
331 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||| |
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|
| T |
25216577 |
gatttggagtggataactgaaatttcatctcag |
25216545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 2 - 331
Target Start/End: Complemental strand, 25281030 - 25280700
Alignment:
| Q |
2 |
tgacggaagactctaaatcagcaagtttggaagaaaa---tatgttgtaataaaaagtgaaaattgcaacattttttgaagacaaacacattcaccgaat |
98 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||||| |||||||||||||||||| |||||| | | ||||| | || ||||| | ||| | ||| |
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|
| T |
25281030 |
tgacagaagactctaaatcagcatatatggaagaaaaaattatgttgtaataaaaagttaaaattactaaattttctcaaaacaaata--ttcgctaaat |
25280933 |
T |
|
| Q |
99 |
taccttaagagttctcgaagtgacagacaatgatttgatatttgcaatctcaaccagccagttgagtagaagcaaaggattttctccgccagttaaccac |
198 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||||| |||||| ||| ||||||||||||||||||||||| ||||||| ||| | ||||| |||| |
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| T |
25280932 |
taccttaagtgttcttgaagtgactgacaatgatttcatatttccaagctcaaccagccagttgagtagaaacaaaggagactctatgtaagttacccac |
25280833 |
T |
|
| Q |
199 |
actcctacatcaagatttacatgatcgatacaagagagattgctattgctcgcacagagtttctgaagaggaacatgcccacaataaacaaaggtacaaa |
298 |
Q |
| |
|
| | |||||| |||||||||||| |||||| |||||||||| |||||||| |||| |||||||| | |||| ||| ||| | ||||||||||||||| | |
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| T |
25280832 |
atttctacattaagatttacatgttcgatagaagagagatttatattgctctcacaaagtttctgtaaaggatcatacccgcgataaacaaaggtacaga |
25280733 |
T |
|
| Q |
299 |
gacttggcgtggataactgaaatttcatctcag |
331 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||| |
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| T |
25280732 |
gatttggagtggataactgaaatttcatctcag |
25280700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 246 - 331
Target Start/End: Complemental strand, 25064940 - 25064855
Alignment:
| Q |
246 |
gctcgcacagagtttctgaagaggaacatgcccacaataaacaaaggtacaaagacttggcgtggataactgaaatttcatctcag |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
25064940 |
gctcgcacagagtttctgaagaggaacatgcccacaataaacaaaggtacaaagacttggcgtggataactgaaatttcaactcag |
25064855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 7058165 - 7058284
Alignment:
| Q |
204 |
tacatcaagatttacatgatcgatacaagagagattgctattgctcgcacagagtttctgaagaggaacatgcccacaataaacaaaggtacaaagactt |
303 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||||||||||||| ||||||| |||| | ||||||||| | |||| ||||||||||||||||| |
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|
| T |
7058165 |
tacatcaagatttacatgtttgattgaagagagattgctattgctcgtgaagagtttttgaaaaccaacatgcccccgataagcaaaggtacaaagactt |
7058264 |
T |
|
| Q |
304 |
ggcgtggataactgaaattt |
323 |
Q |
| |
|
|| || |||||||||||||| |
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|
| T |
7058265 |
ggagtcgataactgaaattt |
7058284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7057939 - 7057995
Alignment:
| Q |
1 |
atgacggaagactctaaatcagcaagtttggaagaaaatatgttgtaataaaaagtg |
57 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
7057939 |
atgacagaagcctctaaatcagcaagaatggaagataatatgttgtaataaaaagtg |
7057995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 6889946 - 6889897
Alignment:
| Q |
126 |
caatgatttgatatttgcaatctcaaccagccagttgagtagaagcaaag |
175 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||| |||| ||||| |
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|
| T |
6889946 |
caatgatttgatattagcaagttcaaccagccagttgagaagaaccaaag |
6889897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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