View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_low_16 (Length: 338)
Name: NF12538_low_16
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 27469421 - 27469104
Alignment:
| Q |
19 |
tgaaatgagtgtgtgaaaagtttaagtcatggtaaatgaagcagatgagacctcaat---acatgcaaattcttgatgtcacaacccaaattgtggtcac |
115 |
Q |
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| T |
27469421 |
tgaaatgagtgtgtgaaaagtttaagtcatggtaaatgaagcagatgagacctcaattagacatgcaaattcttgatgtcacaacccaaattgtggtcac |
27469322 |
T |
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| Q |
116 |
ggacggtttgagtctagcgtcacactagtgtgctgtgtg-------tgaatgttgtaaattctggggtaacataaataaacaacccaaatggttgtcaca |
208 |
Q |
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| T |
27469321 |
ggacggtttgagtctaacgccacactagtgtgctgtgtgcagtgtgtgaatgttgtaaattctggggtaaaataaataaacaacccaaatggctgtcaca |
27469222 |
T |
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| Q |
209 |
aacaatttcttaaaatattgtgtttttgtaggagttccacatttgcgtgaaggtgatgttacacctcaaggtgggaaacctggatgggcggcactgccaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
27469221 |
aacaatttcttaaaatattgtgtttttgtaggagttccacatttgcgtgaaggtgatgttccacctcaaggtgggaaacctggatgggcagcactgccaa |
27469122 |
T |
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| Q |
309 |
atcctaggatcggacctt |
326 |
Q |
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|||||||||| ||||||| |
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| T |
27469121 |
atcctaggattggacctt |
27469104 |
T |
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