View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_low_18 (Length: 326)
Name: NF12538_low_18
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 41426187 - 41425906
Alignment:
| Q |
1 |
acgtcacgattcatcaagggttcgttttgataattgatagtgagagactaaaactgaaagttcaatacaaatccaactctataattaattgtattatttt |
100 |
Q |
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| T |
41426187 |
acgtcacgattcatcaagggttcgttttgataattgatagtgagagactaaaactgaaagttcaatacaaatccaactctataattaattgtattatttt |
41426088 |
T |
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| Q |
101 |
aactaaaatccaatgctaaacgtccattgaaaacaaaactggagttaataatagatagcgatagagatattgatgaatgatgactgatgagaaatatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
41426087 |
aactaaaatccaatgctaaacgtccattgaaaacaaaaatggagttaataatagatagcggtagagatattgatgaatg-------atgagaaatatctt |
41425995 |
T |
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| Q |
201 |
tgcaatttctttcaaaatatcaggattaaattttcaccacatagactgttaatgtgtattgttaagtgttcaagtgttctctgctcctc |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41425994 |
tgcaatttctttcaaaatatcaggattaaattttcaccacatagactgttaatgtgtattgttaagtgttcaagtgttctctggtcctc |
41425906 |
T |
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