View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_low_2 (Length: 736)
Name: NF12538_low_2
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 335 - 718
Target Start/End: Original strand, 42798249 - 42798630
Alignment:
| Q |
335 |
atatcttaaaactgatccaatttctatttgatttgtatgaatgctctcttttgtcgattctgtgtagaaatagcttatatttgggaagcttgtatgaatc |
434 |
Q |
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| T |
42798249 |
atatcttaaaactgatccaatttctatttaatttgtatgaatgctct--tttgtcgattctgtgtagaaatagcttatatttgggaagcttgtatgaatc |
42798346 |
T |
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| Q |
435 |
acagattaaaatttagcagacatgatagaatcacatattaatattggaacatgttactactttgtcaacattgtagttaatgtagttataagttcattta |
534 |
Q |
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| T |
42798347 |
acagattaaaatttagcagacatgatagaatcacatattaatattggaagatgttactactttgtcaacattgtagttaatgtagttataagttcattta |
42798446 |
T |
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| Q |
535 |
gacctttcttttccaatctgctgttataatgctccctattattggggttgcgtagcagaattaggaaaatcttgatccatgacaggcagggaagtgtaga |
634 |
Q |
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| T |
42798447 |
gacctttcttttccaatctgctgttataatgctccctattattggggttgcgtagcagaattaggaaaatcaagatccatgacaggcagggaagtgtaga |
42798546 |
T |
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| Q |
635 |
gcaagagggttcagacgtatatatggagctaatagactttgaatgtaatccagttgtgatggctaactttgggataatcacagt |
718 |
Q |
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| T |
42798547 |
gcaagagggttcagacgtatatatggagctaatagactttgaatgtaatccagttgcgatggctaactttgggataatcacagt |
42798630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 42797595 - 42797791
Alignment:
| Q |
6 |
tcgagagagaagaaacaaagggtgagcctgcaaatagagaaagaaaatgtattccaacgaattggtaaaattgaacaaggatattgaactatcaaaaact |
105 |
Q |
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| T |
42797595 |
tcgaaagagaagaaacaaagggtgagcctgcaaatagagaaagaaaatgtattccaacgaattggtagaattg-------------aactatcaaaaact |
42797681 |
T |
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| Q |
106 |
tctttggaagataagatgtgtcatttagaagcagttttatctaaccttcaccaaaatattcaatccatttccctatacatattaaaacaacgtaacttcc |
205 |
Q |
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| T |
42797682 |
tctttggaagataagatgtgtcatttagaagcagttttatctaaccttcaccaaaatattcaatccatttccctatacatattaaaacaacgtaacttcc |
42797781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 42798152 - 42798208
Alignment:
| Q |
209 |
ataattattatcaactatatgctaaatcaagaaaccgtttgataatatgagttgtgc |
265 |
Q |
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| T |
42798152 |
ataattattatcaactatatgctaaatcaagaaaccatttgataatatgagttgtgc |
42798208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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