View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_low_20 (Length: 305)
Name: NF12538_low_20
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 42156180 - 42156478
Alignment:
| Q |
1 |
agacaacaatcaatcatactcacatgactaaattgatttggtcatatactc----------------ttgatattgtctaaagatttttcttctcatttt |
84 |
Q |
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| T |
42156180 |
agacaacaatcaatcatactcacatgactaaattgatttggtcatatactcatatatctgtatactcttgatattgtc--aagattttttttctcatttt |
42156277 |
T |
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| Q |
85 |
aaattttggtctagtatacttaacatggttacttgagtgagtttgtatatgtacagaatagctcaccagtaaccaaaaatacctacctaacaagtgctta |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42156278 |
aaattttggtctagtatacttaacatggttacttgagtgagtttgtatatgtacagaatagctcaccagtaaccaaaaatacctacctaacaagtgctta |
42156377 |
T |
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| Q |
185 |
acttttcaaataatgcctaagcattannnnnnnncactgtatttgaatattgtgagataagatttctgtattggaaaaatgaagtaaatattatatttgt |
284 |
Q |
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| T |
42156378 |
acttttcaaataatgcctaagcatta-tttttttcactgtatttgaatattgtgggataagatttctgtattggaaaaatgaagtaaatattatatttgt |
42156476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 17132012 - 17132109
Alignment:
| Q |
69 |
tttttcttctcattttaaattttggtctagtatacttaacatggttacttgagtgagtttgtatatgtacagaatagctcaccagtaaccaaaaatac |
166 |
Q |
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||||| || |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
17132012 |
ttttttttttcattttaaattttggtctagtatactttacatgtttacttgagtgagtttgtatatgtacaaaatagcttaccagtaaccaaaaatac |
17132109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 17132153 - 17132254
Alignment:
| Q |
178 |
gtgcttaacttttcaaataatgcctaagcattannnnnnnncactgtatttgaatattgtgagataagatttctgtattggaaaaatgaagtaaatatta |
277 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||| |
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| T |
17132153 |
gtgcttaacttttcaaataatgcctaagcattattttttt-cactgtatttgaatattgtgagataagatttctgtctt-aaaatatgaagtaaatatta |
17132250 |
T |
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| Q |
278 |
tatt |
281 |
Q |
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|||| |
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| T |
17132251 |
tatt |
17132254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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