View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12538_low_24 (Length: 273)
Name: NF12538_low_24
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 4749489 - 4749747
Alignment:
| Q |
1 |
ctggtcatgaaagctctgcttatggtgttttgtggaccgttatcaacctcactaatcatccacatgtcttcgagagagccaaggttttaatactattaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4749489 |
ctggtcatgaaagctctgcttatggtgttttgtggaccgttatcaacctcactaatcatccacatgtcttcgaaagagccaaggttttaatactattaat |
4749588 |
T |
|
| Q |
101 |
taatgtggcattttcaaaatttgttactgnnnnnnnnnnnnaacaaacaaaactatgaaccctttcagaaagaacaagaagagattatggcaagaaggcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4749589 |
taatgtggcattttcaaaatttgttactg-tttttttttttaacaaacaaaactatgaaccctttcagaaagaacaagaagagattatggcaagaaggcc |
4749687 |
T |
|
| Q |
201 |
ttccgatcaaaaaggaattacacatacggaaattaggcaaatgaaatatctttcacaggt |
260 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4749688 |
ttccgatcaaaaaggacttacacatacggaaattaggcaaatgaaatatctttctcaggt |
4749747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 4758195 - 4758293
Alignment:
| Q |
162 |
ctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggaattacacatacggaaattaggcaaatgaaatatctttcacaggt |
260 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||| |||||||||| | | | || |||||||| ||||||| ||||||||||| |||| |
|
|
| T |
4758195 |
ctttcagaaagaacaagaagagatcatggaaacaaggccttccactcaaaaaggactgaaccttaaggaaattaagcaaatgcaatatctttcaaaggt |
4758293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 4757970 - 4758054
Alignment:
| Q |
1 |
ctggtcatgaaagctctgcttatggtgttttgtggaccgttatcaacctcactaatcatccacatgtcttcgagagagccaaggt |
85 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| |||| |||||| | ||||||||||||||||| | || |||||||| |
|
|
| T |
4757970 |
ctggtcatgaaagctctgctcatggaattttgtggactattatttacctcattgatcatccacatgtcttccaaagggccaaggt |
4758054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University