View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12538_low_25 (Length: 269)

Name: NF12538_low_25
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12538_low_25
NF12538_low_25
[»] chr5 (2 HSPs)
chr5 (147-219)||(8254785-8254857)
chr5 (147-219)||(37442516-37442588)
[»] chr6 (4 HSPs)
chr6 (150-219)||(33699402-33699471)
chr6 (150-199)||(12341774-12341823)
chr6 (150-219)||(28992377-28992446)
chr6 (147-219)||(2904767-2904839)
[»] chr4 (2 HSPs)
chr4 (174-219)||(42096783-42096828)
chr4 (153-218)||(24254639-24254704)
[»] chr3 (3 HSPs)
chr3 (181-219)||(54788194-54788232)
chr3 (144-202)||(27788848-27788906)
chr3 (174-219)||(7238909-7238954)
[»] chr1 (2 HSPs)
chr1 (157-219)||(31847645-31847707)
chr1 (154-219)||(622857-622922)
[»] chr2 (3 HSPs)
chr2 (150-219)||(8514007-8514076)
chr2 (157-208)||(22296866-22296917)
chr2 (152-199)||(32016360-32016407)
[»] chr7 (1 HSPs)
chr7 (149-191)||(31195639-31195681)
[»] chr8 (1 HSPs)
chr8 (150-219)||(5995184-5995253)


Alignment Details
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 8254857 - 8254785
Alignment:
Q  147 tctcatctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 219  Q
    |||||| ||||||| |||  |||||||||||| ||||||||||||| |||||||||||  |||||||||||||    
T  8254857 tctcatatgtttttgctctatttcgttcaacgtgagttaactcacgctgaaaaatgcatatatgtgagttaac 8254785  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 37442516 - 37442588
Alignment:
Q  147 tctcatctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 219  Q
    |||||||||||||| ||||||  ||| | ||  ||||||||||||| |||||||| |||||| ||||||||||    
T  37442516 tctcatctgtttttgctcattcccgtcctacatgagttaactcacgctgaaaaatacacctacgtgagttaac 37442588  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 33699471 - 33699402
Alignment:
Q  150 catctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 219  Q
    ||||||||||| |||||| |||| |||||  |||||||| |||||||||||| |||||| ||||||||||    
T  33699471 catctgtttttgctcattctcgtccaacgcaagttaacttacgttgaaaaattcacctacgtgagttaac 33699402  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 12341823 - 12341774
Alignment:
Q  150 catctgtttttactcattttcgttcaacgagagttaactcacgttgaaaa 199  Q
    ||||||||||| ||||||||||| |||||  ||||||||| |||||||||    
T  12341823 catctgttttttctcattttcgtccaacgtaagttaactcgcgttgaaaa 12341774  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 28992377 - 28992446
Alignment:
Q  150 catctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 219  Q
    ||||||||||||||||||  |  || ||| ||||||||||||| |||||||| ||| || ||||||||||    
T  28992377 catctgtttttactcattccctctctacgtgagttaactcacgctgaaaaatacacatacgtgagttaac 28992446  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 2904839 - 2904767
Alignment:
Q  147 tctcatctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 219  Q
    |||||| || |||| |||||| || | ||||| |||||||||||||  ||||||| |||||| ||||||||||    
T  2904839 tctcatttgattttgctcattctcttccaacgtgagttaactcacgcagaaaaatacacctacgtgagttaac 2904767  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 42096828 - 42096783
Alignment:
Q  174 caacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 219  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  42096828 caacgtgagttaactcacgctgaaaaatgcacctatgtgagttaac 42096783  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 24254639 - 24254704
Alignment:
Q  153 ctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaa 218  Q
    |||||| | |||||| |||| |||||  | |||||||||||||||||||||| ||| |||||||||    
T  24254639 ctgtttgtgctcattctcgtccaacgtaaattaactcacgttgaaaaatgcatctacgtgagttaa 24254704  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 54788232 - 54788194
Alignment:
Q  181 agttaactcacgttgaaaaatgcacctatgtgagttaac 219  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  54788232 agttaactcacgttgaaaaatgcacctatgtgaattaac 54788194  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 27788906 - 27788848
Alignment:
Q  144 ttatctcatctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatg 202  Q
    ||||| |||||||||||  |||||| ||| |||||||| |||| |||||||||||||||    
T  27788906 ttatcccatctgtttttgttcatttccgtccaacgagaattaaatcacgttgaaaaatg 27788848  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 7238909 - 7238954
Alignment:
Q  174 caacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 219  Q
    ||||| || |||||||||||||||||||||||||| |||| |||||    
T  7238909 caacgtgatttaactcacgttgaaaaatgcacctacgtgacttaac 7238954  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 31847645 - 31847707
Alignment:
Q  157 ttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 219  Q
    |||||||||||||||| ||||  ||||||||||||  |||||||| || ||||||||||||||    
T  31847645 ttttactcattttcgtccaacatgagttaactcacagtgaaaaatacatctatgtgagttaac 31847707  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 622857 - 622922
Alignment:
Q  154 tgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 219  Q
    ||||||| ||||||  ||| | ||| |||||||||||||||||||||| |||||| ||||||||||    
T  622857 tgtttttgctcattcccgtcctacgtgagttaactcacgttgaaaaatacacctacgtgagttaac 622922  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 8514076 - 8514007
Alignment:
Q  150 catctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 219  Q
    ||||||||||| ||||||| ||| | ||| ||||||| | |||||||||||| |||||| ||||||||||    
T  8514076 catctgtttttgctcatttccgtactacgtgagttaaattacgttgaaaaatacacctacgtgagttaac 8514007  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 22296917 - 22296866
Alignment:
Q  157 ttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcaccta 208  Q
    |||| ||||||| |||||||||  | ||||||||||||||||||||||||||    
T  22296917 ttttgctcatttccgttcaacgtaacttaactcacgttgaaaaatgcaccta 22296866  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 32016360 - 32016407
Alignment:
Q  152 tctgtttttactcattttcgttcaacgagagttaactcacgttgaaaa 199  Q
    |||||||||||||||| || ||||||  ||||||||||||||||||||    
T  32016360 tctgtttttactcattctcattcaacatgagttaactcacgttgaaaa 32016407  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 31195681 - 31195639
Alignment:
Q  149 tcatctgtttttactcattttcgttcaacgagagttaactcac 191  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||    
T  31195681 tcatctgtttttactcatttccgttcaacgcgagttaattcac 31195639  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 5995253 - 5995184
Alignment:
Q  150 catctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 219  Q
    ||||| ||||| ||||||   |||||||| ||||||||||||| |||||||| ||| |||| ||||||||    
T  5995253 catctttttttgctcattcatgttcaacgtgagttaactcacgctgaaaaatacacatatgcgagttaac 5995184  T

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