View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12538_low_26 (Length: 269)

Name: NF12538_low_26
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12538_low_26
NF12538_low_26
[»] chr3 (4 HSPs)
chr3 (19-263)||(26283347-26283591)
chr3 (98-158)||(2133603-2133664)
chr3 (105-158)||(35420499-35420552)
chr3 (105-133)||(22328-22356)
[»] chr4 (3 HSPs)
chr4 (107-162)||(50471753-50471809)
chr4 (105-158)||(25575054-25575108)
chr4 (107-160)||(49738550-49738604)
[»] chr2 (2 HSPs)
chr2 (105-159)||(33393338-33393393)
chr2 (105-133)||(42549835-42549863)
[»] scaffold0570 (1 HSPs)
scaffold0570 (105-158)||(946-1000)
[»] chr8 (4 HSPs)
chr8 (105-158)||(32276915-32276969)
chr8 (105-133)||(8255529-8255557)
chr8 (105-133)||(16921475-16921503)
chr8 (105-133)||(36447923-36447951)
[»] chr7 (1 HSPs)
chr7 (105-158)||(5418304-5418358)
[»] chr5 (2 HSPs)
chr5 (106-158)||(2090643-2090696)
chr5 (105-133)||(36806722-36806750)
[»] chr6 (1 HSPs)
chr6 (105-133)||(579674-579702)
[»] chr1 (2 HSPs)
chr1 (105-133)||(21519180-21519208)
chr1 (107-162)||(50806893-50806949)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 26283347 - 26283591
Alignment:
Q  19 gtagcaacacccttggacactaattaagatgcacacgcaatgccaaataaagaatacaaaatgaaaaacctatttttgttttgtttcaacaacaacaacc 118  Q
    ||||| ||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26283347 gtagctacacccttggacactaattaagatgcacgagcaatgctaaataaagaatacaaaatgaaaaacctatttttgttttgtttcaacaacaacaacc 26283446  T
Q  119 aagctttatcccactctatggggtcgttacatggatcaaacaaccaagccnnnnnnngttttgttt-aagggtgattatatttaaacatcttaatttctc 217  Q
    ||||||||||  ||||  || ||||| ||||| |||||||||||||||||       ||||||||| ||||||||||||||||| |||| ||||||||||    
T  26283447 aagctttatcttactcagtgaggtcgctacat-gatcaaacaaccaagcctttttttgttttgtttcaagggtgattatatttagacattttaatttctc 26283545  T
Q  218 accatacattttaacatctcaatttctttatccgtcttcatctcac 263  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||    
T  26283546 accatacattttaacatctcattttctttatccgtcttcatgtcac 26283591  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 2133603 - 2133664
Alignment:
Q  98 tttgtttcaacaacaacaaccaagctttatcccactctatggggtcg-ttacatggatcaaa 158  Q
    |||||| |||||||||||||||||| ||||||||||   ||||||||  |||||||||||||    
T  2133603 tttgttacaacaacaacaaccaagccttatcccactaagtggggtcgagtacatggatcaaa 2133664  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 35420552 - 35420499
Alignment:
Q  105 caacaacaacaaccaagctttatcccactctatggggtcgttacatggatcaaa 158  Q
    |||||| ||||||||||| ||||||||||  ||||||||| |||||||| ||||    
T  35420552 caacaataacaaccaagccttatcccactaaatggggtcgctacatggaccaaa 35420499  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 22356 - 22328
Alignment:
Q  105 caacaacaacaaccaagctttatcccact 133  Q
    |||||||||||||||||||||||||||||    
T  22356 caacaacaacaaccaagctttatcccact 22328  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 50471809 - 50471753
Alignment:
Q  107 acaacaacaaccaagctttatcccactctatggggtcg-ttacatggatcaaacaac 162  Q
    |||||||||||||||| ||||||||||   |||||||| ||||||||||||||||||    
T  50471809 acaacaacaaccaagcgttatcccactaagtggggtcgattacatggatcaaacaac 50471753  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 25575108 - 25575054
Alignment:
Q  105 caacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaa 158  Q
    |||||||||||||||||| ||||||||||  |||||||| | |||||||||||||    
T  25575108 caacaacaacaaccaagccttatcccactaaatggggtctgctacatggatcaaa 25575054  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 49738550 - 49738604
Alignment:
Q  107 acaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaaca 160  Q
    |||||||||||||||| ||||||||||  |||||||| | |||||||||||||||    
T  49738550 acaacaacaaccaagccttatcccactaaatggggtcggctacatggatcaaaca 49738604  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 33393393 - 33393338
Alignment:
Q  105 caacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaac 159  Q
    ||||||||||||||||||||||||||| |   ||||||| ||||||||||||||||    
T  33393393 caacaacaacaaccaagctttatcccagtaagtggggtcggttacatggatcaaac 33393338  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Original strand, 42549835 - 42549863
Alignment:
Q  105 caacaacaacaaccaagctttatcccact 133  Q
    |||||||||||||||||||||||||||||    
T  42549835 caacaacaacaaccaagctttatcccact 42549863  T

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Target: scaffold0570 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 946 - 1000
Alignment:
Q  105 caacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaa 158  Q
    |||||||||||||||||| ||||||||||  |||||||| | |||||||||||||    
T  946 caacaacaacaaccaagccttatcccactaaatggggtcagctacatggatcaaa 1000  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 32276969 - 32276915
Alignment:
Q  105 caacaacaacaaccaagctttatcccactctatggggtcgt-tacatggatcaaa 158  Q
    |||||||||||||||||||||||||||||   |||| |||| |||||||||||||    
T  32276969 caacaacaacaaccaagctttatcccactaagtgggttcgtctacatggatcaaa 32276915  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Original strand, 8255529 - 8255557
Alignment:
Q  105 caacaacaacaaccaagctttatcccact 133  Q
    |||||||||||||||||||||||||||||    
T  8255529 caacaacaacaaccaagctttatcccact 8255557  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 16921503 - 16921475
Alignment:
Q  105 caacaacaacaaccaagctttatcccact 133  Q
    |||||||||||||||||||||||||||||    
T  16921503 caacaacaacaaccaagctttatcccact 16921475  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 36447951 - 36447923
Alignment:
Q  105 caacaacaacaaccaagctttatcccact 133  Q
    |||||||||||||||||||||||||||||    
T  36447951 caacaacaacaaccaagctttatcccact 36447923  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 5418358 - 5418304
Alignment:
Q  105 caacaacaacaaccaagctttatcccactctatggggtcg-ttacatggatcaaa 158  Q
    |||||||||||||||||| ||||||||||  |||||||||  |||||||||||||    
T  5418358 caacaacaacaaccaagccttatcccactaaatggggtcgactacatggatcaaa 5418304  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 2090696 - 2090643
Alignment:
Q  106 aacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaa 158  Q
    |||||||||||| |||| ||||||||||| |||||||| | |||||||||||||    
T  2090696 aacaacaacaacaaagccttatcccactcaatggggtcgggtacatggatcaaa 2090643  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 36806750 - 36806722
Alignment:
Q  105 caacaacaacaaccaagctttatcccact 133  Q
    |||||||||||||||||||||||||||||    
T  36806750 caacaacaacaaccaagctttatcccact 36806722  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 579702 - 579674
Alignment:
Q  105 caacaacaacaaccaagctttatcccact 133  Q
    |||||||||||||||||||||||||||||    
T  579702 caacaacaacaaccaagctttatcccact 579674  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 21519208 - 21519180
Alignment:
Q  105 caacaacaacaaccaagctttatcccact 133  Q
    |||||||||||||||||||||||||||||    
T  21519208 caacaacaacaaccaagctttatcccact 21519180  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 50806949 - 50806893
Alignment:
Q  107 acaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaacaac 162  Q
    |||||||||||||||| |||| |||||  |||||||| |||||||| ||||||||||    
T  50806949 acaacaacaaccaagccttattccactaaatggggtcggttacatgaatcaaacaac 50806893  T

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