View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_low_29 (Length: 247)
Name: NF12538_low_29
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 28519298 - 28519061
Alignment:
| Q |
1 |
ggttttaatttggaaatgttagggaagcaaggttggaatttcttaaccaacctcggttctatggtttcaagaatcttcaaagttaaatatttttcaattg |
100 |
Q |
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| T |
28519298 |
ggttttaatttggaaattttaaggaagcaaggttggaatttcttaaccaacctcggttctatggtttcaagaatcttcaaagctaaatattttctaattg |
28519199 |
T |
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| Q |
101 |
gggattttttggaatcgtctttgagacatactcttaattatgtatggtgtagcatctagacatctcaaaattttttgtagaattgataccgttggagaat |
200 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
28519198 |
gggattttttgggattgtctttgagacatactcttaattatgtatggtgtagcatctagacatctcaaaaattgttgtagaattgataccgttggagaat |
28519099 |
T |
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| Q |
201 |
tggtgatggctccttgattcctatttggaacacacctt |
238 |
Q |
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| T |
28519098 |
tggtgatggctccttgattcctatttggaacacacctt |
28519061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 11738940 - 11738786
Alignment:
| Q |
1 |
ggttttaatttggaaatgttagggaagcaaggttggaatttcttaaccaacctcggttctatggtttcaagaatcttcaaagttaaatatttttcaattg |
100 |
Q |
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| T |
11738940 |
ggtttcaatttagcaatgttggggaaacaatgttgaaatttcttaaccaacccggatgctatggtctctcgaatcttcaaagctaaatacttttcgaatg |
11738841 |
T |
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| Q |
101 |
gggattttttggaatcgtctttgagacatactcttaattatgtatggtgtagcat |
155 |
Q |
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| T |
11738840 |
ggaattttttaggagcgtctttgggacacaatcctagttatgtttggagtagcat |
11738786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 9678918 - 9679072
Alignment:
| Q |
1 |
ggttttaatttggaaatgttagggaagcaaggttggaatttcttaaccaacctcggttctatggtttcaagaatcttcaaagttaaatatttttcaattg |
100 |
Q |
| |
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||||| ||||| | |||||| || || ||||||||||||||||||||||||| | | ||||||| || ||||||| ||| |||||| ||||| | || |
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| T |
9678918 |
ggtttcaatttagcaatgttgggtaaacaaggttggaatttcttaaccaacccggatgctatggtctctcaaatcttccaagctaaatacttttcgaatg |
9679017 |
T |
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| Q |
101 |
gggattttttggaatcgtctttgagacatactcttaattatgtatggtgtagcat |
155 |
Q |
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| T |
9679018 |
ggaattttttagaatcgtctttgggacacaatcctaattatgtttggcgtagcat |
9679072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 41688628 - 41688495
Alignment:
| Q |
22 |
gggaagcaaggttggaatttcttaaccaacctcggttctatggtttcaagaatcttcaaagttaaatatttttcaattggggattttttggaatcgtctt |
121 |
Q |
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||||| ||| ||||||||||||||||||||| | | ||||||| || |||||||||||| |||||| ||| | | || | ||||||| | | |||||| |
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| T |
41688628 |
gggaaacaatgttggaatttcttaaccaacccggatgctatggtctctcgaatcttcaaagctaaatactttacgaatgagaattttttaggagcgtctt |
41688529 |
T |
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| Q |
122 |
tgagacatactcttaattatgtatggtgtagcat |
155 |
Q |
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| T |
41688528 |
tgggacacaatcctagttatgtttggcgtagcat |
41688495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 13011661 - 13011552
Alignment:
| Q |
1 |
ggttttaatttggaaatgttagggaagcaaggttggaatttcttaaccaacctcggttctatggtttcaagaatcttcaaagttaaatatttttcaattg |
100 |
Q |
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||||| || |||| |||||||||||| ||||||||||||||||| ||||||| | | ||||||| || ||||||| ||||| |||||| || ||| || |
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| T |
13011661 |
ggtttcaacttggcaatgttagggaaacaaggttggaatttcttgaccaaccctgatgctatggtgtctagaatctccaaagctaaatacttcccaaatg |
13011562 |
T |
|
| Q |
101 |
gggatttttt |
110 |
Q |
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|||||||||| |
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| T |
13011561 |
gggatttttt |
13011552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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