View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12538_low_3 (Length: 697)

Name: NF12538_low_3
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12538_low_3
NF12538_low_3
[»] chr2 (6 HSPs)
chr2 (277-538)||(17984051-17984316)
chr2 (14-120)||(17984657-17984763)
chr2 (14-120)||(17980863-17980968)
chr2 (431-515)||(17976547-17976631)
chr2 (565-603)||(17983900-17983938)
chr2 (638-674)||(17987251-17987287)
[»] chr5 (1 HSPs)
chr5 (48-120)||(29830777-29830849)
[»] chr1 (2 HSPs)
chr1 (15-117)||(15851296-15851397)
chr1 (21-117)||(25380714-25380812)
[»] chr7 (3 HSPs)
chr7 (15-59)||(12153096-12153140)
chr7 (241-277)||(5031921-5031957)
chr7 (15-99)||(10203048-10203132)
[»] chr8 (1 HSPs)
chr8 (241-278)||(26537969-26538006)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 277 - 538
Target Start/End: Complemental strand, 17984316 - 17984051
Alignment:
Q  277 aataaaatttatgacataaaataaataacttgaatggataaataaaagagattcaattcaaagaggagaatccacctta----cgtgccttgaaacttct 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    |||||||||||||||||    
T  17984316 aataaaatttatgacataaaataaataacttgaatggataaataaaagagattcagttcaaagaggagaattcaccttaagtacgtgccttgaaacttct 17984217  T
Q  373 tatcaatataacaaaagaaaatgaagttgcatatacctatcaatagccaagccatgcacatcttactttgcaatcaatttcgtctttgaaccagtttcat 472  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17984216 tatcaatataacaagagaaaatgaagttgcatatacctatcaatagccaagccatgcacatcttactttgcaatcaatttcgtctttgaaccagtttcat 17984117  T
Q  473 acacatatatgacccctccctcccttccaaagtttcagtacatccacatagtagagatatcatcaa 538  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17984116 acacatatatgacccctccctcccttccaaagtttcagtacatccacatagtagagatatcatcaa 17984051  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 17984763 - 17984657
Alignment:
Q  14 aggcaacgacaaaagtaataagactatgtaataataataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattgataatt 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  17984763 aggcaatgacaaaagtaataagactatgtaataataataagattcactaagaattggtagattcaaagtcaaatcttaatacaatccatgattgataatt 17984664  T
Q  114 ctcacac 120  Q
    |||||||    
T  17984663 ctcacac 17984657  T

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Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 17980968 - 17980863
Alignment:
Q  14 aggcaacgacaaaagtaataagactatgtaataataataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattgataatt 113  Q
    |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||    
T  17980968 aggcaatgataaaagtaataagactatgtaataata-taagattcactaagaattggtagattcaaagtcaaatcttaataaaatccatgattgataatt 17980870  T
Q  114 ctcacac 120  Q
    |||||||    
T  17980869 ctcacac 17980863  T

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Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 431 - 515
Target Start/End: Complemental strand, 17976631 - 17976547
Alignment:
Q  431 catcttactttgcaatcaatttcgtctttgaaccagtttcatacacatatatgacccctccctcccttccaaagtttcagtacat 515  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17976631 catcttactttgcaatcaatttcttctttgaaccagtttcatacacatatatgacccctccctcccttccaaagtttgagtacat 17976547  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 565 - 603
Target Start/End: Complemental strand, 17983938 - 17983900
Alignment:
Q  565 gcccgaaaaaagcttacaagaaatgtcataaactctttt 603  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17983938 gcccgaaaaaagcttacaagaaatgtcataaactctttt 17983900  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 638 - 674
Target Start/End: Complemental strand, 17987287 - 17987251
Alignment:
Q  638 agataagtttcccaagcatgagagagttattcaccag 674  Q
    |||||||||||||||||||||||||||| ||||||||    
T  17987287 agataagtttcccaagcatgagagagtttttcaccag 17987251  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 29830777 - 29830849
Alignment:
Q  48 taataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattgataattctcacac 120  Q
    ||||||||||||||||||||||  | ||||||||||||||||||| |||||| |  |||||||||||||||||    
T  29830777 taataagattcactaagaattgagagattcaaagtcaaatcttaacacaatctattattgataattctcacac 29830849  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 15851296 - 15851397
Alignment:
Q  15 ggcaacgacaaaagtaataagactatgtaataataataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattgataattc 114  Q
    ||||| ||||||||||||||||||||||| |||||||||||| || |||| ||||  | |||||| || ||||||||| |||||  | ||||||||||||    
T  15851296 ggcaatgacaaaagtaataagactatgtagtaataataagatccaataag-attgagagattcaatgtaaaatcttaacacaatttaagattgataattc 15851394  T
Q  115 tca 117  Q
    |||    
T  15851395 tca 15851397  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 25380812 - 25380714
Alignment:
Q  21 gacaaaagtaataagactatgtaataataataagattcacta--agaattggtacattcaaagtcaaatcttaatacaatccacgattgataattctca 117  Q
    ||||||||||||||||| ||| |||||||||||||||| |||  |||||||    |||||| ||||||| ||||| |||||    ||||||||||||||    
T  25380812 gacaaaagtaataagaccatgcaataataataagattcgctaggagaattgagtgattcaatgtcaaatattaatgcaatctgttattgataattctca 25380714  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 12153096 - 12153140
Alignment:
Q  15 ggcaacgacaaaagtaataagactatgtaataataataagattca 59  Q
    ||||| ||||||||||||||||||||| |||||||||| ||||||    
T  12153096 ggcaatgacaaaagtaataagactatgcaataataatatgattca 12153140  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 5031957 - 5031921
Alignment:
Q  241 tgacatatattacatggggtaaagcaccattatccca 277  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  5031957 tgacatatattacagggggtaaagcaccattaaccca 5031921  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 10203048 - 10203132
Alignment:
Q  15 ggcaacgacaaaagtaataagactatgtaataataataagattcactaagaattggtacattcaaagtcaaatcttaatacaatc 99  Q
    ||||| || |||| || |||||||||||   ||| |||||||||||||  |||||  | ||||||||||||||||||| ||||||    
T  10203048 ggcaatgaaaaaattattaagactatgttcaaatgataagattcactagaaattgagagattcaaagtcaaatcttaacacaatc 10203132  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 26538006 - 26537969
Alignment:
Q  241 tgacatatattacatggggtaaagcaccattatcccaa 278  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  26538006 tgacatatattacaaggggtaaagcaccattaacccaa 26537969  T

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