View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12538_low_30 (Length: 247)

Name: NF12538_low_30
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12538_low_30
NF12538_low_30
[»] chr5 (2 HSPs)
chr5 (1-224)||(9082360-9082582)
chr5 (4-117)||(4032184-4032296)
[»] chr4 (1 HSPs)
chr4 (14-200)||(621248-621433)
[»] chr3 (1 HSPs)
chr3 (14-200)||(1576723-1576908)
[»] chr2 (1 HSPs)
chr2 (60-224)||(23833612-23833772)
[»] chr7 (2 HSPs)
chr7 (94-224)||(44419317-44419446)
chr7 (4-64)||(44419956-44420016)
[»] scaffold0026 (1 HSPs)
scaffold0026 (94-203)||(104649-104758)
[»] chr1 (1 HSPs)
chr1 (138-206)||(45905134-45905202)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9082582 - 9082360
Alignment:
Q  1 tttttgaatcccatttttgaaataggttggattcagaagtttgaacatatcaaagttctttctgttcaaaaaaccccacattccaannnnnnn-acaaac 99  Q
    ||||||||||| ||||||||||| ||||||||||||||  |||||||||| || |||| ||||||||||||| ||| |||||||||        ||||||    
T  9082582 tttttgaatcctatttttgaaatgggttggattcagaatcttgaacatatgaatgttccttctgttcaaaaa-ccctacattccaattttttttacaaac 9082484  T
Q  100 ccaatcttcatcattcaacctttatttttctttgttaaaagttatctgagcaccccaatgttgtagatttcaaggctgtttgtgaagaggacgattttgt 199  Q
    |||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9082483 ccaatcttcatcattcaaccttaatttttctttatcaaaagttatatgagcaccccaatgttgtagatttcaaggctgtttgtgaagaggacgattttgt 9082384  T
Q  200 tcatctgcaacctgtgttttggtcg 224  Q
    |||| |||||||||| |||||||||    
T  9082383 tcatttgcaacctgt-ttttggtcg 9082360  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 4032296 - 4032184
Alignment:
Q  4 ttgaatcccatttttgaaataggttggattcagaagtttgaacatatcaaagttctttctgttcaaaaaaccccacattccaannnnnnnacaaacccaa 103  Q
    |||||||| ||||||||||  ||||||||||||||| ||||||||||||| | || ||||||||| |||||||||||||||||       ||||||||||    
T  4032296 ttgaatcctatttttgaaacgggttggattcagaagcttgaacatatcaatgctccttctgttca-aaaaccccacattccaattattttacaaacccaa 4032198  T
Q  104 tcttcatcattcaa 117  Q
    ||||||||||||||    
T  4032197 tcttcatcattcaa 4032184  T

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Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 621248 - 621433
Alignment:
Q  14 tttttgaaataggttggattcagaagtttgaacatatcaaagttctttctgttcaaaaaaccccacattccaannnnnnnacaaacccaatcttcatcat 113  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||       ||||||||||||||||||||    
T  621248 tttttgaaatgggttggattgagaagtttgaacatatcaatgttccttctgttcaaaaa-ccccacattccaatttttttacaaacccaatcttcatcat 621346  T
Q  114 tcaacctttatttttctttgttaaaagttatctgagcaccccaatgttgtagatttcaaggctgtttgtgaagaggacgattttgtt 200  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  621347 tcaaccttcatttttctttgtcaaaagttatctgagcaccccaatgttgtagatttcaaggttgtttgtgaagaggatgattttgtt 621433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 1576908 - 1576723
Alignment:
Q  14 tttttgaaataggttggattcagaagtttgaacatatcaaagttctttctgttcaaaaaaccccacattccaannnnnnnacaaacccaatcttcatcat 113  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||       ||||||||||||||||||||    
T  1576908 tttttgaaatgggttggattgagaagtttgaacatatcaatgttccttctgttcaaaaa-ccccacattccaatttttttacaaacccaatcttcatcat 1576810  T
Q  114 tcaacctttatttttctttgttaaaagttatctgagcaccccaatgttgtagatttcaaggctgtttgtgaagaggacgattttgtt 200  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  1576809 tcaaccttcatttttctttgtcaaaagttatctgagcaccccaatgttgtagatttcaaggttgtttgtgaagaggatgattttgtt 1576723  T

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Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 23833612 - 23833772
Alignment:
Q  60 ttctgttcaaaaaaccccacattccaannnnnnnacaaacccaatcttcatcattcaacctttatttttctttgttaaaagttatctgagcaccccaatg 159  Q
    ||||||||||||| |||||||||||||       |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  23833612 ttctgttcaaaaa-ccccacattccaatttttttacaaacccaatcttcatcattcaaccttcatttttctttgtcaaaagttatctgagcaccccaatg 23833710  T
Q  160 ttgtagatttcaaggctgtttgtgaagaggacgattttgttcatctgcaacctgtgttttggtcg 224  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||||||||||| |||||||||    
T  23833711 ttgtagatttcaaggctgtt--tgaagaggacgattctgttcatctgcaacctgt-ttttggtcg 23833772  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 44419446 - 44419317
Alignment:
Q  94 acaaacccaatcttcatcattcaacctttatttttctttgttaaaagttatctgagcaccccaatgttgtagatttcaaggctgtttgtgaagaggacga 193  Q
    |||||||||||||||||||||||||||| |||||||||||| || ||||||||| |||||| |||||||||||| |||||||||||| ||||||||| ||    
T  44419446 acaaacccaatcttcatcattcaaccttcatttttctttgtcaatagttatctgggcacccaaatgttgtagatctcaaggctgtttatgaagaggaaga 44419347  T
Q  194 ttttgttcatctgcaacctgtgttttggtcg 224  Q
    |||||||||||||  |||||| |||||||||    
T  44419346 ttttgttcatctgacacctgt-ttttggtcg 44419317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 44420016 - 44419956
Alignment:
Q  4 ttgaatcccatttttgaaataggttggattcagaagtttgaacatatcaaagttctttctg 64  Q
    |||||||| ||||||||||| ||||||||||||||| ||||||||||||| |||| |||||    
T  44420016 ttgaatcctatttttgaaatgggttggattcagaagcttgaacatatcaatgttccttctg 44419956  T

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Target: scaffold0026 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 104758 - 104649
Alignment:
Q  94 acaaacccaatcttcatcattcaacctttatttttctttgttaaaagttatctgagcaccccaatgttgtagatttcaaggctgtttgtgaagaggacga 193  Q
    |||||||||||||||||||||||||||| | |||||||| | || ||||||||| |||||| ||| |||||||| |||||| ||||| ||||||||| ||    
T  104758 acaaacccaatcttcatcattcaaccttcaattttctttatcaagagttatctgggcacccaaatattgtagatctcaaggttgtttatgaagaggaaga 104659  T
Q  194 ttttgttcat 203  Q
    ||||||||||    
T  104658 ttttgttcat 104649  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 45905202 - 45905134
Alignment:
Q  138 aagttatctgagcaccccaatgttgtagatttcaaggctgtttgtgaagaggacgattttgttcatctg 206  Q
    |||||||||| |||||| |||||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  45905202 aagttatctgggcacccaaatgttgtagatctcaaggctgtttatgaagaggaagattttgttcatctg 45905134  T

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