View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_low_31 (Length: 244)
Name: NF12538_low_31
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 14538443 - 14538643
Alignment:
| Q |
39 |
gcctttatgtaggagaggaatacagaccaaggtggctgtttgattgattttgtgcagaaatagcatttccgtcatctactttcgtcccccaaccattatt |
138 |
Q |
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| T |
14538443 |
gcctttatgtaggagaggaatacagaccaaggtggctgtttgattgattttgtgcagaaatagcatttccgtcatatactttcgtcccccaaccattatt |
14538542 |
T |
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| Q |
139 |
agttgattaatgatatcagaagtaatagttctggtaatctgttgtggaaatgaaagggatatatttcttggaatgcttttccagtttttagcatgccttt |
238 |
Q |
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| T |
14538543 |
agttgattaatgatatcagaagtaataattctggtaatctgttgtggaaatgaaagggatatatttcttggaatgcttttccagtttttagcatgccttt |
14538642 |
T |
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| Q |
239 |
g |
239 |
Q |
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| T |
14538643 |
g |
14538643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 238
Target Start/End: Original strand, 14553955 - 14554125
Alignment:
| Q |
68 |
aggtggctgtttgattgattttgtgcagaaatagcatttccgtcatctactttcgtcccccaaccattattagttgattaatgatatcaga-agtaatag |
166 |
Q |
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| T |
14553955 |
aggtggttgtttgattgattttgtgcataaatagtattggcatcatctactatcattcccgaacccttattagtttataactgatctcacacagtcatac |
14554054 |
T |
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| Q |
167 |
ttctggtaatctgttgtggaaatgaaagggatatatttcttggaatgcttttccagtttttagcatgccttt |
238 |
Q |
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| T |
14554055 |
ttttggtaatgtgttgtgaaaatgaaagagatgtatttcttgggaggctttt-caggttttagcatgccttt |
14554125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 14538387 - 14538425
Alignment:
| Q |
1 |
cctttatggcgagcacagctgttgtgtcagtcagtctag |
39 |
Q |
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| T |
14538387 |
cctttatggcgagcacagctgttgtgtcagtcagtctag |
14538425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 14526122 - 14526168
Alignment:
| Q |
192 |
aagggatatatttcttggaatgcttttccagtttttagcatgccttt |
238 |
Q |
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| T |
14526122 |
aagggatatatttcttagaaggcttttccaggttttagcgtgccttt |
14526168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 14548602 - 14548667
Alignment:
| Q |
170 |
tggtaatctgttgtggaaatgaaagggatatatttcttggaatgcttttccagtttttagcatgcc |
235 |
Q |
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| T |
14548602 |
tggtaatgtcttgtgaaaatggaagggatgtatttcttggaaagctttttcaggtttcagcatgcc |
14548667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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