View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_low_33 (Length: 237)
Name: NF12538_low_33
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 28519428 - 28519651
Alignment:
| Q |
1 |
atgttcctcgagagacgtttgaaggaggaatacactcatgcaataagatggaatagtttgagcaactggcttgatgaaaacctctttacccacttgtgat |
100 |
Q |
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| T |
28519428 |
atgttcctctatagacgttggaaggaggaatacactcatgcaataagataaaatagtttgagcaactggcttgatgaaaacctctttacccgcttgtgat |
28519527 |
T |
|
| Q |
101 |
aaaactttactactccaagaagagatacgcttccacaccatatcattgatataattaaaaactgatttcttgctactgcctaccatagaagggagtccta |
200 |
Q |
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| T |
28519528 |
aaaactttactactccaagaagagatacgcttccacaccatatcattgatataattaaaaatagatttcttgctactgcctttcatagaagggagtccta |
28519627 |
T |
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| Q |
201 |
aatatttttccgtcccaatacact |
224 |
Q |
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|||||||| ||||||||||||||| |
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| T |
28519628 |
aatattttcccgtcccaatacact |
28519651 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 1503786 - 1503843
Alignment:
| Q |
33 |
cactcatgcaataagatggaatagtttgagcaactggcttgatgaaaacctctttacc |
90 |
Q |
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|||||||||||||||| |||||| ||| ||||||| ||||| |||||||||||||| |
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| T |
1503786 |
cactcatgcaataagaaggaataacttgggcaactgatttgattaaaacctctttacc |
1503843 |
T |
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