View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_low_34 (Length: 233)
Name: NF12538_low_34
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 35478614 - 35478814
Alignment:
| Q |
19 |
ggagtggacagattacaagtcaatggcatttactcaatgtgtaagatcattaatattctgctgattcaaaacatcaaaagtaaaa-cccgtttcacatac |
117 |
Q |
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| T |
35478614 |
ggagtggacagattacaagtcaatggcatttactcaatgtgtaagatcattaa-attctgctgattcaaaacatcaaaagaaaaaacccgtttcacatac |
35478712 |
T |
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| Q |
118 |
nnnnnnngcacaacatattatcttcttatattaataatcttgtccttgtttgttctatgtaggttgtgaatgagactttaaggatggcaaacataattgg |
217 |
Q |
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| T |
35478713 |
aaaaaaagcacagcatattatcttcttatattaataatcttgtccttgtttgttctatgtaggttgtgaatgagactttaaggatggcaaacataattgg |
35478812 |
T |
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| Q |
218 |
tg |
219 |
Q |
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|| |
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| T |
35478813 |
tg |
35478814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 31556850 - 31556890
Alignment:
| Q |
23 |
tggacagattacaagtcaatggcatttactcaatgtgtaag |
63 |
Q |
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| T |
31556850 |
tggacagattacaagtcaatgacatttactcaatgtgtaag |
31556890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 31556956 - 31557003
Alignment:
| Q |
172 |
ctatgtaggttgtgaatgagactttaaggatggcaaacataattggtg |
219 |
Q |
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| T |
31556956 |
ctatgcaggttgtgaatgagaccttaagggttgcaaacataattggtg |
31557003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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