View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_low_37 (Length: 208)
Name: NF12538_low_37
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 4e-80; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 25070492 - 25070317
Alignment:
| Q |
20 |
cagaactcatcaatttaatattttatcaaacatgtataatgnnnnnnnttcaaatgagttagacaatatgatcaacaatctatcaagcatgtaaataggg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25070492 |
cagaactcatcaatttaatattttatcaaacatgtataatgaaaaaaattcaaatgagttagacaatatgatcaacaatctatcaagcatgtaaataggg |
25070393 |
T |
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| Q |
120 |
gccaagggaaacaaaaattgtgttttgcaagttgaaaggacattaaccttaatgaggtcagatgtcgacctttgct |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25070392 |
gccaagggaaacaaaaattgtgttttgcaagttgaaaggacatttaccttaatgaggtcagatgtcgacctttgct |
25070317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 25128467 - 25128292
Alignment:
| Q |
20 |
cagaactcatcaatttaatattttatcaaacatgtataatgnnnnnnnttcaaatgagttagacaatatgatcaacaatctatcaagcatgtaaataggg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25128467 |
cagaactcatcaatttaatattttatcaaacatgtataatgaaaaaaattcaaatgagttagacaatatgatcaacaatctatcaagcatgtaaataggg |
25128368 |
T |
|
| Q |
120 |
gccaagggaaacaaaaattgtgttttgcaagttgaaaggacattaaccttaatgaggtcagatgtcgacctttgct |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25128367 |
gccaagggaaacaaaaattgtgttttgcaagttgaaaggacatttaccttaatgaggtcagatgtcgacctttgct |
25128292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 25102739 - 25102676
Alignment:
| Q |
132 |
aaaaattgtgttttgcaagttgaaaggacattaaccttaatgaggtcagatgtcgacctttgct |
195 |
Q |
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|||||||||||||| |||||| | ||||||| ||||||||||||||||||||| ||||||||| |
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| T |
25102739 |
aaaaattgtgttttaaaagttggagggacatttaccttaatgaggtcagatgtcaacctttgct |
25102676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 25161833 - 25161770
Alignment:
| Q |
132 |
aaaaattgtgttttgcaagttgaaaggacattaaccttaatgaggtcagatgtcgacctttgct |
195 |
Q |
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|||||||||||||| |||||| | ||||||| ||||||||||||||||||||| ||||||||| |
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| T |
25161833 |
aaaaattgtgttttaaaagttggagggacatttaccttaatgaggtcagatgtcaacctttgct |
25161770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 25217083 - 25217020
Alignment:
| Q |
132 |
aaaaattgtgttttgcaagttgaaaggacattaaccttaatgaggtcagatgtcgacctttgct |
195 |
Q |
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|||||||||||||| ||| ||| ||||||||| ||||||||||||| ||||||| ||||||||| |
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| T |
25217083 |
aaaaattgtgttttacaaattgtaaggacatttaccttaatgaggtaagatgtcaacctttgct |
25217020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 25281238 - 25281175
Alignment:
| Q |
132 |
aaaaattgtgttttgcaagttgaaaggacattaaccttaatgaggtcagatgtcgacctttgct |
195 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||| ||||||||||||| ||||||| ||||||||| |
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| T |
25281238 |
aaaaattgtgttttacaaattgtaaggacatttaccttaatgaggtaagatgtcaacctttgct |
25281175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 25102876 - 25102773
Alignment:
| Q |
26 |
tcatcaatttaatattttatcaaacatgtataatgnnnnnnnttcaaatgagttagacaatatgatcaacaatctatcaagcatgtaaataggggccaag |
125 |
Q |
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||||||| |||| |||||| ||||||||||||| | ||||||||||||||||| ||| ||||||| |||||||| ||||||||| | | ||||| |
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| T |
25102876 |
tcatcaacttaacattttaccaaacatgtataaagaaaataattcaaatgagttagacagtataatcaacattctatcaaacatgtaaatggagaccaag |
25102777 |
T |
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| Q |
126 |
ggaa |
129 |
Q |
| |
|
|||| |
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|
| T |
25102776 |
ggaa |
25102773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 25161970 - 25161867
Alignment:
| Q |
26 |
tcatcaatttaatattttatcaaacatgtataatgnnnnnnnttcaaatgagttagacaatatgatcaacaatctatcaagcatgtaaataggggccaag |
125 |
Q |
| |
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||||||| |||| |||||| ||||||||||||| | ||||||||||||||||| ||| ||||||| |||||||| ||||||||| | | ||||| |
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| T |
25161970 |
tcatcaacttaacattttaccaaacatgtataaagaaaataattcaaatgagttagacagtataatcaacattctatcaaacatgtaaatggagaccaag |
25161871 |
T |
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| Q |
126 |
ggaa |
129 |
Q |
| |
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|||| |
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| T |
25161870 |
ggaa |
25161867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 25217198 - 25217152
Alignment:
| Q |
68 |
ttcaaatgagttagacaatatgatcaacaatctatcaagcatgtaaa |
114 |
Q |
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||||||||||||||||||||| ||||||| |||||||| |||||||| |
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| T |
25217198 |
ttcaaatgagttagacaatataatcaacattctatcaaacatgtaaa |
25217152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 25281353 - 25281307
Alignment:
| Q |
68 |
ttcaaatgagttagacaatatgatcaacaatctatcaagcatgtaaa |
114 |
Q |
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||||||||||||||||||||| ||||||| |||||||| |||||||| |
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| T |
25281353 |
ttcaaatgagttagacaatataatcaacattctatcaaacatgtaaa |
25281307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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