View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12538_low_6 (Length: 467)
Name: NF12538_low_6
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 15 - 449
Target Start/End: Complemental strand, 28129354 - 28128919
Alignment:
| Q |
15 |
gatagatgtcgaacaatggacacactcacacactatctatctgaagtgtccatgatatactacatatat--gtatagtaaagaagaagtagaagaactta |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28129354 |
gatagatgtccaacaatggacacactcacacaatatctatctgaagtgtccatgatatactacatatatatgtatagtaaagaagaagtagaagaactta |
28129255 |
T |
|
| Q |
113 |
agtctctcnnnnnnnnnnggtagaagaacttaatgaagttgtatataaaaatcggcttaaaaatagaatgtaatttcagagtgacacaaatgacatttgt |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28129254 |
agtctctcaaaaaaaaa-ggtagaagaacttaatgaagttgtatataaaaatcggcttaaaaatagaatgtaatttcagagtgacacaaatgacatttgt |
28129156 |
T |
|
| Q |
213 |
gatatgctaactttgatattggttgatttttaatttaagtatagtattactgattagtaacatgttattgcagaatccttatgtggagtctaagagtcca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28129155 |
gatatgctaactttgatattggttgatttttaatttaagtatagtattactgattagtaacatgttattgcagaatccttatgtggagtctaagagtcca |
28129056 |
T |
|
| Q |
313 |
tgtgggtctagctttagatctgcaatttcagtggcaacaaacatggttacagtttcattagggacagaaactgatggctccatcatctgtccagctgatc |
412 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28129055 |
tgtgggtctagctttggatctgcaatttcagtggcaacaaacatggttacagtttcattagggacagaaactgatggctccattatctgtccagctgatc |
28128956 |
T |
|
| Q |
413 |
acaattcagtagtgggaatcaagccaactgttggact |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28128955 |
acaattcagtagtgggaatcaagccaactgttggact |
28128919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 281 - 449
Target Start/End: Complemental strand, 28110580 - 28110412
Alignment:
| Q |
281 |
tgcagaatccttatgtggagtctaagagtccatgtgggtctagctttagatctgcaatttcagtggcaacaaacatggttacagtttcattagggacaga |
380 |
Q |
| |
|
||||||| ||||||||||| || | |||||||| |||||||||| ||| || |||||||||||||| ||||||||| ||||||| || |||||||| |
|
|
| T |
28110580 |
tgcagaacccttatgtggaatccgaaagtccatgcacgtctagctttggataagccatttcagtggcaactaacatggttgcagtttctttggggacaga |
28110481 |
T |
|
| Q |
381 |
aactgatggctccatcatctgtccagctgatcacaattcagtagtgggaatcaagccaactgttggact |
449 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
28110480 |
aactcatggctccattatctgtccagctgatcacaactcagtagtggggatcaagccaactgttggact |
28110412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University