View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_low_7 (Length: 454)
Name: NF12538_low_7
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 126 - 438
Target Start/End: Complemental strand, 39154824 - 39154512
Alignment:
| Q |
126 |
ggcggaagatactcacaatcctccccaaataatacatatttcagcacaaaacaccttgccacccttttctcctttggtcctaaccagaacacttccaacc |
225 |
Q |
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| T |
39154824 |
ggcggaagatactcacaatcctccccaaataatacatatttcagcacaaaacaccttgccacccttttctcctttggtcctaaccagaacacttccaacc |
39154725 |
T |
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| Q |
226 |
caagattggaatgcccaggtagcatataacaacccaaaacttccaacaaccactccctttgtctgaccttgctttatgccaagctgcatacatgtttcaa |
325 |
Q |
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| T |
39154724 |
caagattggaatgcccaggtagcatataacaacccaaaacttccaacaaccactccctttgtctgaccttgctttatgccaagctgcatacatgtttcaa |
39154625 |
T |
|
| Q |
326 |
gagcagaactgaatctcttcagtgtttgcttctcacctacgtacgagtaaacagttcgaaccgatgagattgcttgttctgctatgctaccagcaactcc |
425 |
Q |
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| T |
39154624 |
gagcagaactgaatctcttcagtgtttgcttctcacctacgtacgagtaaacagttcgaaccgatgagattgcttgttctgctatgctaccagcaactcc |
39154525 |
T |
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| Q |
426 |
gaatgcatccttc |
438 |
Q |
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| T |
39154524 |
gaatgcatccttc |
39154512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 39154940 - 39154878
Alignment:
| Q |
11 |
cagagacctgcatatagtaaatttcaaatattatgaacatgtttttgcaagagtctttttctt |
73 |
Q |
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| T |
39154940 |
cagagacctgcatatagtaaatttcaaatattatgaacatgtttttgcaagagtctttttctt |
39154878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 130 - 396
Target Start/End: Complemental strand, 29125662 - 29125396
Alignment:
| Q |
130 |
gaagatactcacaatcctccccaaataatacatatttcagcacaaaacaccttgccacccttttctcctttggtcctaaccagaacacttccaacccaag |
229 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||||| ||| |||||||||| |
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| T |
29125662 |
gaagatacttacaatcctctccaaataatacatatttcagcacaaaacacttggccacccttttctccgttggtcctgaccagaaaactcccaacccaag |
29125563 |
T |
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| Q |
230 |
attggaatgcccaggtagcatataacaacccaaaacttccaacaaccactccctttgtctgaccttgctttatgccaagctgcatacatgtttcaagagc |
329 |
Q |
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| T |
29125562 |
attggaatgtccacctagaatatagcaaccctaaacttccagtagccactccctttgtttgacattgctttatgccaagctccatacatgtttcatgaga |
29125463 |
T |
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| Q |
330 |
agaactgaatctcttcagtgtttgcttctcacctacgtacgagtaaacagttcgaaccgatgagatt |
396 |
Q |
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| T |
29125462 |
cgagctgaaccttttcaatgttttcttctgacctacataggaataaacagttctaacaaatgagatt |
29125396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 142 - 438
Target Start/End: Original strand, 32743337 - 32743640
Alignment:
| Q |
142 |
aatcctccccaaataatacatatttcagcacaaaacaccttgccacccttt--tctcctttggtcctaaccagaacacttccaacccaagattggaatg- |
238 |
Q |
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||||||| ||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||| ||||||||||| || |
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| T |
32743337 |
aatcctctccagataatacatatttcagcacaaaacacattgccacccttttctctcctttggtcctgaccagaacactcccaatccaagattggattgt |
32743436 |
T |
|
| Q |
239 |
----cccaggtagcatataacaacccaaaacttccaacaaccactccctttgtctgaccttgctttatgccaagctgcatacatgtttcaagagcagaac |
334 |
Q |
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||| |||||||||| ||||| ||||||| | | |||||||||||| |||| | |||||||||||||| |||| |||||||||||| | | |
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| T |
32743437 |
ccactccacgtagcatatagaaaccctaaacttcaagttatcactccctttgtttgacagttctttatgccaagctccataaatgtttcaagagacaagc |
32743536 |
T |
|
| Q |
335 |
tgaatctcttcagtgtttgcttctcacctacgtacgagtaaacagttcgaaccgatgagattgcttgttctgctatgctaccagcaactccgaatgcatc |
434 |
Q |
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|||| || ||| ||||| ||||| || ||| ||||| |||||||||| ||| |||||||| ||||||||| ||| ||||| | || ||| || ||||| |
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| T |
32743537 |
tgaaccttatcaatgttttcttctgacatacatacgaataaacagttctaacaaatgagatttcttgttctgttatactaccggaaaatccaaaagcatc |
32743636 |
T |
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| Q |
435 |
cttc |
438 |
Q |
| |
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|||| |
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| T |
32743637 |
cttc |
32743640 |
T |
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