View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12539_high_1 (Length: 583)
Name: NF12539_high_1
Description: NF12539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12539_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 23037626 - 23037925
Alignment:
| Q |
18 |
actataagggttaagaggaaaaaggagaaaatatatggcaaatagagaacaattagagccatggataggatagtatgaagcatatcctactagttagtgt |
117 |
Q |
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| T |
23037626 |
actataagggttaagaggaaaaaggagaaaaaatatggcaagtagagaactattagagccatggataggatagaatgaagcatatcctactagttagtgt |
23037725 |
T |
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| Q |
118 |
ctgtagatttatttatatacgtgcacccacccacagtgtatacaatttgtgtttgttttatgctatgtcatcatctttggttgtacaatattctaattaa |
217 |
Q |
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| T |
23037726 |
ctgtagatttatttatatacgtg----cacccacaatgtatacattttgtgtttgttttatgctatgtcatcatctttggttgtacaatat-----ttaa |
23037816 |
T |
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| Q |
218 |
aggttcaacctaactaatttattagtagtttagcacgatgtaaagattccgttgtgtttaatggaatcattaaattgtctgaataaaatagtttgaaatt |
317 |
Q |
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||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23037817 |
aggttcaacctaactaa-ttattagtag-ttagtacgatgtaaagattccgttgtgtttaatggaatcattaaattgtctgaataatatagtttgaaatt |
23037914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 23147378 - 23147470
Alignment:
| Q |
18 |
actataagggttaagaggaaaaaggagaaaatatatggcaaatagagaacaattagagccatggataggatagtatgaagcatatcctactag |
110 |
Q |
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| T |
23147378 |
actataagggttaagaggataaagaagaaaatatatggcaagtagaggactagtagagccatggataggatagtttgaactatatcctactag |
23147470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 23040503 - 23040621
Alignment:
| Q |
18 |
actataagggttaagaggaaaaaggagaaaatatatggcaaatagagaacaattagagccatggataggatagtatgaagcatatcctactagttagtgt |
117 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||| ||||| | | ||||||||||| || ||||| |||| | |||||||||| |||||| |
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| T |
23040503 |
actacaagggttaagaggataaaggagaaaatatatggcaagtagaggattagtagagccatggctaaaatagtttgaactaaatcctactagctagtgt |
23040602 |
T |
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| Q |
118 |
ctgtagatttatttatata |
136 |
Q |
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| T |
23040603 |
ctatatatatatatatata |
23040621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 23141735 - 23141796
Alignment:
| Q |
21 |
ataagggttaagaggaaaaaggagaaaatatatggcaaatagagaacaattagagccatgga |
82 |
Q |
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| T |
23141735 |
ataagggctaagaggacaaaggagaaaatatatgacaagtagatgactagtagagccatgga |
23141796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 21781393 - 21781492
Alignment:
| Q |
18 |
actataagggttaagaggaaaaaggagaaaatatatggcaaatagagaacaattagagccatggataggatagtatgaagcatatcctactagttagtgt |
117 |
Q |
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||||||||| ||||||| | | ||||||||||||||||||| |||||||| | ||||||||||| | ||||||||| ||||||||| ||| |||||| |
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| T |
21781393 |
actataaggattaagagaagagaggagaaaatatatggcaagtagagaactagaagagccatggaaaacatagtatgatccatatcctaatagctagtgt |
21781492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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