View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12539_high_5 (Length: 275)
Name: NF12539_high_5
Description: NF12539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12539_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 49341028 - 49341272
Alignment:
| Q |
11 |
agagaagaactatccagaattgatggagattgggaaagaaattgtacaaaaatgtggagggcttcctttggccctaagaacattggggagttctctactc |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49341028 |
agagaagaactatccaaaattgatggagattgggaaagaaattgtacaaaaatgtggagggcttcctttggccctaagaacattggggagttctctattc |
49341127 |
T |
|
| Q |
111 |
ttaaaagatgatatagaagagtggaggtttatcagggacagtgaaatttgggatttaccacaaaaagatgacgacattttgcctgctatcaaattaagtt |
210 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
49341128 |
ttaaaagatgatatagaagagtggaagtttaacagggacagtgaaatttgggatttaccacaaaaagatgacgacattttgtctgctatcaaa--aagtt |
49341225 |
T |
|
| Q |
211 |
atgatcagttaccttcttatttaaaacaatgttttgcttgcttctct |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49341226 |
atgatcagttaccttcttatttaaaacaatgttttgcttgcttctct |
49341272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 49352404 - 49352650
Alignment:
| Q |
11 |
agagaagaactatccagaattgatggagattgggaaagaaattgtacaaaaatgtggagggcttcctttggccctaagaacattggggagttctctactc |
110 |
Q |
| |
|
|||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
49352404 |
agagaaaaaatatccagaattggtggagattgggaaagaaattgtacaaaaatgtggagggcttcctttggccctaagaacattagggagttctctattc |
49352503 |
T |
|
| Q |
111 |
ttaaaagatgatatagaagagtggaggtttatcagggacagtgaaatttgggatttaccacaaaaagatgacgacattttgcctgctatcaaattaagtt |
210 |
Q |
| |
|
|||||| |||| | |||||||||| ||||||||| |||||||| |||||| |||||||||||||||| || ||||||||||||| | |||||||||||| |
|
|
| T |
49352504 |
ttaaaatttgatgttgaagagtggaagtttatcagagacagtgagatttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagtt |
49352603 |
T |
|
| Q |
211 |
atgatcagttaccttcttatttaaaacaatgttttgcttgcttctct |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352604 |
atgatcagttaccttcttatttaaaacaatgttttgcttgcttctct |
49352650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 32783865 - 32783620
Alignment:
| Q |
11 |
agagaagaactatccagaattgatggagattgggaaagaaattgtacaaaaatgtggagggcttcctttggccctaagaacattggggagttctctactc |
110 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
32783865 |
agagaaaaactatccagaattgatgaagattgggaaagaaattgtacaaaaatgtggagggcttcctttggccctaagaacatcggggagttctctattc |
32783766 |
T |
|
| Q |
111 |
ttaaaagatgatatagaagagtggaggtttatcagggacagtgaaatttgggatttaccacaaaaagatgacgacattttgcctgctatcaaattaagtt |
210 |
Q |
| |
|
|||||| |||| | |||||||||| ||||||||| ||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
32783765 |
ctaaaagttgatgtggaagagtggaagtttatcagagacagtgaaatttggaatttacctcaaaaagaagatgacattttgcctgctatcaaattaagtt |
32783666 |
T |
|
| Q |
211 |
atgatcagttaccttcttatttaaaacaatgttttgcttgcttctc |
256 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
32783665 |
acgatcagttaccttcttatttaaaacgatgttttacttgcttctc |
32783620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 29602498 - 29602253
Alignment:
| Q |
11 |
agagaagaactatccagaattgatggagattgggaaagaaattgtacaaaaatgtggagggcttcctttggccctaagaacattggggagttctctactc |
110 |
Q |
| |
|
|||||| || |||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
29602498 |
agagaaaaaatatccaaaattgatagagattgggaaagaaattgttcaaaaatgtggagggcttcctttggccctaagaacattggggagtttattgttc |
29602399 |
T |
|
| Q |
111 |
ttaaaagatgatatagaagagtggaggtttatcagggacagtgaaatttgggatttaccacaaaaagatgacgacattttgcctgctatcaaattaagtt |
210 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||||||| ||| |||||| |||||||||||||||| || || ||||||||||||||||||||||||| |
|
|
| T |
29602398 |
ttaaaagatgatatagaagagtggaagtttgttagggacaatgagatttggaatttaccacaaaaagaagatgatattttgcctgctatcaaattaagtt |
29602299 |
T |
|
| Q |
211 |
atgatcagttaccttcttatttaaaacaatgttttgcttgcttctc |
256 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
29602298 |
ttgatcaattaccatcttatttaaaacgatgttttgcctgcttctc |
29602253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 29750796 - 29751041
Alignment:
| Q |
11 |
agagaagaactatccagaattgatggagattgggaaagaaattgtacaaaaatgtggagggcttcctttggccctaagaacattggggagttctctactc |
110 |
Q |
| |
|
|||||| || |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
29750796 |
agagaaaaaatatccaaaattgatagagattgggaaagaaattgttcaaaaatgtggagggcttcctttggccctaagaacattggggagttcattgttc |
29750895 |
T |
|
| Q |
111 |
ttaaaagatgatatagaagagtggaggtttatcagggacagtgaaatttgggatttaccacaaaaagatgacgacattttgcctgctatcaaattaagtt |
210 |
Q |
| |
|
|||||||||||||| |||||||||| |||| | ||||||| ||| |||||| |||||||||||||||| || || |||||||||||| |||||||||||| |
|
|
| T |
29750896 |
ttaaaagatgatattgaagagtggaagtttgttagggacaatgagatttggaatttaccacaaaaagaagatgatattttgcctgctctcaaattaagtt |
29750995 |
T |
|
| Q |
211 |
atgatcagttaccttcttatttaaaacaatgttttgcttgcttctc |
256 |
Q |
| |
|
|||||| ||||| || |||||||||| ||||||||| |||||||| |
|
|
| T |
29750996 |
ttgatcaattaccctcatatttaaaacgatgttttgcctgcttctc |
29751041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 29743769 - 29744008
Alignment:
| Q |
21 |
tatccagaattgatggagattgggaaagaaattgtacaaaaatgtggagggcttcctttggccctaagaacattggggagttctctactcttaa----aa |
116 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || |
|
|
| T |
29743769 |
tatccaaaattgatagagattgggaaagaaattgtgcaaaaatgtggagggcttcctttggccctaagaacattggggagttcattgttcttaattaaaa |
29743868 |
T |
|
| Q |
117 |
gatgatatagaagagtggaggtttatcagggacagtgaaatttgggatttaccacaaaaagatgacgacattttgcctgctatcaaattaagttatgatc |
216 |
Q |
| |
|
|||||||| |||||||||| |||| | ||||||| ||| |||||| |||||||||||||| | || || ||||||||||||||||||||||||| ||||| |
|
|
| T |
29743869 |
gatgatattgaagagtggaagtttgttagggacaatgagatttggaatttaccacaaaaaaaagatgatattttgcctgctatcaaattaagttttgatc |
29743968 |
T |
|
| Q |
217 |
agttaccttcttatttaaaacaatgttttgcttgcttctc |
256 |
Q |
| |
|
| ||||| |||||||| |||| ||||||||| |||||||| |
|
|
| T |
29743969 |
aattaccgtcttatttgaaacgatgttttgcctgcttctc |
29744008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 33 - 256
Target Start/End: Original strand, 35157936 - 35158159
Alignment:
| Q |
33 |
atggagattgggaaagaaattgtacaaaaatgtggagggcttcctttggccctaagaacattggggagttctctactcttaaaagatgatatagaagagt |
132 |
Q |
| |
|
||||||||||| ||||| ||||| | ||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||| ||||||| |||||| |
|
|
| T |
35157936 |
atggagattggaaaagatattgtgcttaaatgtggagggcttccattggccctaaggacattggggagttcgctgttcttaaaagttgatatacaagagt |
35158035 |
T |
|
| Q |
133 |
ggaggtttatcagggacagtgaaatttgggatttaccacaaaaagatgacgacattttgcctgctatcaaattaagttatgatcagttaccttcttattt |
232 |
Q |
| |
|
||| |||| | ||||||| ||| |||||| ||||||| |||||||| || |||||||| || || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
35158036 |
ggaagtttgttagggacaatgagatttggaatttaccgcaaaaagacgaggacattttaccagcaatcaaattaagttatgatcaattaccttcttattt |
35158135 |
T |
|
| Q |
233 |
aaaacaatgttttgcttgcttctc |
256 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
35158136 |
aaaacagtgttttgcttgcttctc |
35158159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University