View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12539_high_9 (Length: 215)

Name: NF12539_high_9
Description: NF12539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12539_high_9
NF12539_high_9
[»] chr7 (3 HSPs)
chr7 (14-197)||(5181002-5181185)
chr7 (138-190)||(22803143-22803195)
chr7 (138-190)||(22869638-22869690)
[»] chr2 (3 HSPs)
chr2 (67-197)||(28105035-28105162)
chr2 (111-197)||(27967579-27967663)
chr2 (16-117)||(6188761-6188863)
[»] chr1 (1 HSPs)
chr1 (16-190)||(31297479-31297650)
[»] chr3 (2 HSPs)
chr3 (16-93)||(3667094-3667171)
chr3 (17-93)||(55287024-55287099)
[»] chr4 (1 HSPs)
chr4 (68-193)||(39624087-39624209)
[»] chr6 (2 HSPs)
chr6 (19-93)||(26370880-26370953)
chr6 (149-190)||(20868227-20868268)
[»] chr5 (1 HSPs)
chr5 (137-199)||(25579632-25579694)
[»] chr8 (1 HSPs)
chr8 (24-93)||(40237355-40237424)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 5181185 - 5181002
Alignment:
Q  14 cagagacggaaaaaatggattttaaggataaaccgataaaatttaagtctttggtgtaggaattttaatgatttagaataaatccgacacaaataagaaa 113  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  5181185 cagagacggaaaaaatggattctaaggataaaccgataaaatttaagtctttggtgtagggattttaatgatttagaataaatccgacacaaacaagaaa 5181086  T
Q  114 ttgttgatgaatatttgagagtaagagttttaagattttagagagaagaagatgatttttgaaatgtttgattgatttcatatg 197  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5181085 ttgttgatgaatatttgagagtaagagttttaaggttttagagagaagaagatgatttttgaaatgtttgattgatttcatatg 5181002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 22803195 - 22803143
Alignment:
Q  138 gagttttaagattttagagagaagaagatgatttttgaaatgtttgattgatt 190  Q
    |||||||| | |||||||||||||||||| ||| ||||||| |||||||||||    
T  22803195 gagttttagggttttagagagaagaagataattgttgaaatatttgattgatt 22803143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 22869690 - 22869638
Alignment:
Q  138 gagttttaagattttagagagaagaagatgatttttgaaatgtttgattgatt 190  Q
    |||||||| | |||||||||||||||||| ||| ||||||| |||||||||||    
T  22869690 gagttttagggttttagagagaagaagataattgttgaaatatttgattgatt 22869638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 28105035 - 28105162
Alignment:
Q  67 gtgtaggaattttaatgatttagaata-aatccgacacaaataagaaattgttgatgaatatttgagagtaagagttttaagattttagagagaagaaga 165  Q
    ||||||| ||| |||| |||||||||| ||||||| |||| ||| |||||||| ||||| |||||||||||||||||||| | ||||||||   ||||||    
T  28105035 gtgtagggattctaataatttagaatagaatccgatacaattaataaattgtt-atgaacatttgagagtaagagttttagggttttagag---agaaga 28105130  T
Q  166 tgatttttgaaatgtttgattgatttcatatg 197  Q
    | ||| ||||||||||||||||||||||||||    
T  28105131 taattattgaaatgtttgattgatttcatatg 28105162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 27967663 - 27967579
Alignment:
Q  111 aaattgttgatgaatatttgagagtaagagttttaagattttagagagaagaagatgatttttgaaatgtttgattgatttcatatg 197  Q
    |||||||| ||||| |||||||||||||||||||  | ||||||||||||||  ||  || ||||||||||||||||||||||||||    
T  27967663 aaattgtt-atgaacatttgagagtaagagtttttgggttttagagagaagataat-tttgttgaaatgtttgattgatttcatatg 27967579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 6188863 - 6188761
Alignment:
Q  16 gagacggaaaaaatggattttaaggataaaccgataaaatttaagtctttggtgtaggaattttaatgatttagaata-aatccgacacaaataagaaat 114  Q
    ||||||| ||||||| |||||| |||  ||||||||||||| || |||   ||||||| |||||| |||||||||||| ||| ||| |||||  ||||||    
T  6188863 gagacggtaaaaatgaattttagggacgaaccgataaaattcaattctcaagtgtaggtattttagtgatttagaatagaattcgatacaaaggagaaat 6188764  T
Q  115 tgt 117  Q
    |||    
T  6188763 tgt 6188761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 31297479 - 31297650
Alignment:
Q  16 gagacggaaaaaatggattttaaggataaaccgataaaatttaagtctttggtgtaggaattttaatgatttagaata-aatccgacacaaataagaaat 114  Q
    ||||||| ||||||||||| || | || |||| | |||||  ||||||   ||||||||||| ||||||||||||||| ||||||| | |||  ||||||    
T  31297479 gagacggtaaaaatggattctaggaatgaaccaaaaaaatccaagtctcaagtgtaggaattctaatgatttagaatagaatccgatataaaggagaaat 31297578  T
Q  115 tgttgatgaatatttgagagtaagagttttaagattttagagagaagaagatgatttttgaaatgtttgattgatt 190  Q
    |||  ||||||||||||||| |||||||||| | ||||||||   ||||||| ||| |||||||||||||||||||    
T  31297579 tgtc-atgaatatttgagagcaagagttttagggttttagag---agaagataattgttgaaatgtttgattgatt 31297650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 3667171 - 3667094
Alignment:
Q  16 gagacggaaaaaatggattttaaggataaaccgataaaatttaagtctttggtgtaggaattttaatgatttagaata 93  Q
    ||||||| |||||| |||| ||||||  ||||||||||||| ||||||  |||||||||||| |||||||||||||||    
T  3667171 gagacggtaaaaatagattataaggacgaaccgataaaattcaagtctcaggtgtaggaattctaatgatttagaata 3667094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 55287024 - 55287099
Alignment:
Q  17 agacggaaaaaatggattttaaggataaaccgataaaatttaagtctttggtgtaggaattttaatgatttagaata 93  Q
    |||||| ||||||||||| || ||| ||||| ||||||| |||||||    |||||||||| |||||||||||||||    
T  55287024 agacggtaaaaatggattctatggacaaaccaataaaatctaagtctcaa-tgtaggaattctaatgatttagaata 55287099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 193
Target Start/End: Complemental strand, 39624209 - 39624087
Alignment:
Q  68 tgtaggaattttaatgatttagaata-aatccgacacaaataagaaattgttgatgaatatttgagagtaagagttttaagattttagagagaagaagat 166  Q
    |||||| ||| ||||||| ||||||| ||||||| |||||  ||||||| || ||  ||||||||||||||||||| |||| |||||| |   |||||||    
T  39624209 tgtagggattctaatgatgtagaatagaatccgatacaaaggagaaattctt-atacatatttgagagtaagagttctaaggttttagcg---agaagat 39624114  T
Q  167 gatttttgaaatgtttgattgatttca 193  Q
     ||| ||||||||||||||||||||||    
T  39624113 aattgttgaaatgtttgattgatttca 39624087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 26370953 - 26370880
Alignment:
Q  19 acggaaaaaatggattttaaggataaaccgataaaatttaagtctttggtgtaggaattttaatgatttagaata 93  Q
    |||| ||||||||||| || |||  ||||||||||||  ||||||  |||||||||||| |||||||||||||||    
T  26370953 acggtaaaaatggattctagggacgaaccgataaaatccaagtctc-ggtgtaggaattctaatgatttagaata 26370880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 20868268 - 20868227
Alignment:
Q  149 ttttagagagaagaagatgatttttgaaatgtttgattgatt 190  Q
    |||||||||||||||||| ||| || ||||||||||||||||    
T  20868268 ttttagagagaagaagataattgttaaaatgtttgattgatt 20868227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 25579694 - 25579632
Alignment:
Q  137 agagttttaagattttagagagaagaagatgatttttgaaatgtttgattgatttcatatgtg 199  Q
    ||||||||| | ||||| ||||||||||||  |||||||||||||||||| ||| || |||||    
T  25579694 agagttttaggtttttaaagagaagaagatagtttttgaaatgtttgattaattccaaatgtg 25579632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 40237424 - 40237355
Alignment:
Q  24 aaaaatggattttaaggataaaccgataaaatttaagtctttggtgtaggaattttaatgatttagaata 93  Q
    ||||||||||  || ||| || ||||||||||| ||||||  | |||||||||| |||||||||||||||    
T  40237424 aaaaatggatcctatggaaaatccgataaaattgaagtctcagttgtaggaattctaatgatttagaata 40237355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University