View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12539_low_12 (Length: 245)
Name: NF12539_low_12
Description: NF12539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12539_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 6967962 - 6967733
Alignment:
| Q |
1 |
ccccttcaaactcatcataaaacttttgtctttcatccatctttagaactaaagactttctcacatattcaccttggagtttctttgcttggttggttga |
100 |
Q |
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| T |
6967962 |
ccccttcaaactcatcataaaacttttgtctttcatccatctttagaactaaagactttctcacatattcaccttggagtttctttgcttggttggttga |
6967863 |
T |
|
| Q |
101 |
tttagatgttaagtagttttcaatgtataagaaagcttcattggttctcatataatcaccaatgttctcaaagaatctaacctcaacaaaagggtaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967862 |
tttagatgttaagtagttttcaatgtataagaaagcttcattggttctcatataatcaccaatgttctcaaagaatctaacctcaacaaaagggtaacaa |
6967763 |
T |
|
| Q |
201 |
aagttggctaatttctctgagaatttctca |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
6967762 |
aagttggctaatttctctgagaatttctca |
6967733 |
T |
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