View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12539_low_3 (Length: 469)

Name: NF12539_low_3
Description: NF12539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12539_low_3
NF12539_low_3
[»] chr3 (11 HSPs)
chr3 (19-452)||(1833731-1834163)
chr3 (109-165)||(45590746-45590802)
chr3 (51-98)||(38318997-38319044)
chr3 (123-164)||(2304191-2304232)
chr3 (127-167)||(11253614-11253654)
chr3 (70-166)||(44014716-44014812)
chr3 (62-166)||(45541619-45541723)
chr3 (109-168)||(25459546-25459605)
chr3 (123-166)||(51929850-51929893)
chr3 (127-164)||(584159-584196)
chr3 (109-165)||(36189724-36189780)
[»] chr1 (19 HSPs)
chr1 (53-168)||(37593600-37593715)
chr1 (123-166)||(33723300-33723343)
chr1 (109-163)||(11893514-11893568)
chr1 (109-166)||(4033935-4033992)
chr1 (62-166)||(11695909-11696014)
chr1 (52-166)||(6231734-6231848)
chr1 (51-152)||(14737658-14737760)
chr1 (128-170)||(30013993-30014035)
chr1 (127-165)||(49517182-49517220)
chr1 (128-165)||(11941376-11941413)
chr1 (109-166)||(23373231-23373288)
chr1 (127-168)||(29793870-29793911)
chr1 (136-165)||(35351192-35351221)
chr1 (109-170)||(48748509-48748570)
chr1 (109-165)||(6292587-6292643)
chr1 (109-165)||(7217993-7218049)
chr1 (134-166)||(24460319-24460351)
chr1 (127-163)||(32859868-32859904)
chr1 (127-167)||(51957313-51957353)
[»] chr8 (17 HSPs)
chr8 (62-166)||(43368618-43368722)
chr8 (115-166)||(4763995-4764046)
chr8 (71-158)||(39881647-39881734)
chr8 (84-166)||(7918700-7918781)
chr8 (62-143)||(39049320-39049401)
chr8 (53-166)||(12851215-12851330)
chr8 (70-166)||(16162816-16162912)
chr8 (51-99)||(40728402-40728450)
chr8 (123-166)||(9700110-9700153)
chr8 (123-165)||(1117416-1117458)
chr8 (51-153)||(2458497-2458599)
chr8 (131-165)||(7149233-7149267)
chr8 (127-165)||(10758176-10758214)
chr8 (112-166)||(39389094-39389148)
chr8 (109-166)||(25872343-25872400)
chr8 (109-165)||(14926901-14926957)
chr8 (51-99)||(38537628-38537676)
[»] chr7 (16 HSPs)
chr7 (109-165)||(23214950-23215006)
chr7 (127-168)||(43854957-43854998)
chr7 (134-170)||(34036037-34036073)
chr7 (127-166)||(40252041-40252080)
chr7 (109-163)||(3468709-3468763)
chr7 (124-158)||(25833419-25833453)
chr7 (109-167)||(29363603-29363661)
chr7 (123-165)||(40598404-40598446)
chr7 (123-165)||(46281061-46281103)
chr7 (123-168)||(529471-529516)
chr7 (116-165)||(1418521-1418570)
chr7 (127-164)||(7513672-7513709)
chr7 (79-156)||(24967126-24967203)
chr7 (53-166)||(30535602-30535715)
chr7 (123-163)||(12792419-12792459)
chr7 (134-166)||(19302481-19302513)
[»] chr2 (12 HSPs)
chr2 (63-167)||(15120232-15120336)
chr2 (62-162)||(5902473-5902571)
chr2 (53-168)||(43529774-43529889)
chr2 (109-170)||(6988214-6988275)
chr2 (115-158)||(9478058-9478101)
chr2 (127-166)||(10563478-10563517)
chr2 (70-165)||(41905835-41905930)
chr2 (127-165)||(43259948-43259986)
chr2 (126-163)||(17976289-17976326)
chr2 (127-168)||(18179062-18179103)
chr2 (127-163)||(5043481-5043517)
chr2 (127-171)||(33503111-33503155)
[»] chr5 (22 HSPs)
chr5 (68-157)||(11457152-11457241)
chr5 (124-158)||(5946490-5946524)
chr5 (123-168)||(6717223-6717268)
chr5 (53-170)||(11297110-11297227)
chr5 (51-152)||(32172690-32172791)
chr5 (51-152)||(37611147-37611248)
chr5 (51-152)||(37787877-37787978)
chr5 (115-163)||(31723906-31723954)
chr5 (113-164)||(5563800-5563851)
chr5 (123-157)||(13508549-13508583)
chr5 (123-169)||(36680032-36680078)
chr5 (51-156)||(1899191-1899295)
chr5 (103-168)||(14331455-14331520)
chr5 (109-166)||(14599290-14599347)
chr5 (112-165)||(36542205-36542258)
chr5 (125-165)||(9174927-9174967)
chr5 (72-168)||(12459917-12460013)
chr5 (133-165)||(14257567-14257599)
chr5 (134-166)||(17369323-17369355)
chr5 (127-167)||(17756303-17756343)
chr5 (123-163)||(27565129-27565169)
chr5 (109-165)||(34975459-34975514)
[»] chr6 (11 HSPs)
chr6 (62-162)||(2455858-2455958)
chr6 (123-165)||(13908349-13908391)
chr6 (127-166)||(32205931-32205970)
chr6 (127-165)||(13907978-13908016)
chr6 (134-168)||(31623670-31623704)
chr6 (95-152)||(34429646-34429703)
chr6 (127-163)||(324079-324115)
chr6 (52-92)||(2112238-2112278)
chr6 (52-92)||(8010395-8010435)
chr6 (127-163)||(12111080-12111116)
chr6 (123-167)||(34531509-34531553)
[»] chr4 (17 HSPs)
chr4 (109-173)||(28615429-28615493)
chr4 (122-166)||(46714909-46714953)
chr4 (127-166)||(39691067-39691106)
chr4 (109-165)||(19429804-19429860)
chr4 (111-170)||(46013227-46013286)
chr4 (111-170)||(46247302-46247361)
chr4 (117-163)||(3637299-3637345)
chr4 (134-168)||(25309312-25309346)
chr4 (126-168)||(47399597-47399639)
chr4 (110-168)||(54277239-54277297)
chr4 (127-168)||(21953386-21953427)
chr4 (127-168)||(35571547-35571588)
chr4 (63-168)||(53315375-53315480)
chr4 (109-165)||(2811566-2811622)
chr4 (68-168)||(7367970-7368070)
chr4 (109-169)||(11264396-11264456)
chr4 (51-99)||(22666711-22666759)


Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 1833731 - 1834163
Alignment:
Q  19 actattttcataaattatctttgtaagactacggaaataaaccgaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctc 118  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  1833731 actattttcataaattatctttgtgagtctacggaaataaaccgaaaataacttatgaacatattataagttgt-ttgatacgcttttcaaaacaatctc 1833829  T
Q  119 ataggtgtttatgctagtagataagttcaaataagtcaattcaaacagactcatagctatttatatcatgagatgagataaacaaaattaaacttttcca 218  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1833830 ataggtgtttatgctagtagttaagttcaaataagtcaattcaaacagactcatagctatttatatcataagatgagataaacaaaattaaacttttcca 1833929  T
Q  219 aacaaaactttaggtagttagtttgttacttgtttttatagatttcaacccttatcacaatcacatttaaattaccatgcagagtttcatgttttgcaac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1833930 aacaaaactttaggtagttagtttgttacttgtttttatagatttcaacccttatcacaatcacatttaaattaccatgcagagtttcatgttttgcaac 1834029  T
Q  319 atggaacaaattatccatacatggaagcagagagcaaagatctagcaatggaagatgtggacatattactaaatcattacaaggatttagttgctaagta 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1834030 atggaacaaattatccatacatggaagcagagagcaaagatctagcaatggaagatgtggacatattactaaatcactacaaggatttagttgctaagta 1834129  T
Q  419 cacaatcatatgcaaagctatcaattgtctttca 452  Q
    |||||||||||||||||||||||||| |||||||    
T  1834130 cacaatcatatgcaaagctatcaattatctttca 1834163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 45590746 - 45590802
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||| ||||| | ||| ||||||||||||||||||||||| |||||||||||||||    
T  45590746 aaacagtctcacaagtgcttatgctagtagataagttcaaaaaagtcaattcaaaca 45590802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 38318997 - 38319044
Alignment:
Q  51 ggaaataaaccgaaaatagcttatgaacatgttataagttgtattcat 98  Q
    |||||||| | ||||||||||||||||||||||||||||||| |||||    
T  38318997 ggaaataagctgaaaatagcttatgaacatgttataagttgttttcat 38319044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 2304232 - 2304191
Alignment:
Q  123 gtgtttatgctagtagataagttcaaataagtcaattcaaac 164  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  2304232 gtgtttatgctagtagatcagttcaaataagccaattcaaac 2304191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 11253614 - 11253654
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaacaga 167  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  11253614 ttatgctagtagataatctcaaataagtcaattcaaacaga 11253654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 44014812 - 44014716
Alignment:
Q  70 cttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    |||||||||| || ||||| ||| |||||| | |||   ||||| ||||| | ||||||||||||||||||||  ||||||||| |||| |||||||    
T  44014812 cttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacag 44014716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 45541619 - 45541723
Alignment:
Q  62 gaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattca 161  Q
    ||||| ||||||||||||||| ||||| ||| |||||| | | ||| ||||| ||| | | |||||||| | | || ||||| |||||||||||||| ||    
T  45541619 gaaaacagcttatgaacatgtcataagctgttttcataagttcttctaaacagtcttacaagtgtttataccattaaataagctcaaataagtcaatcca 45541718  T
Q  162 aacag 166  Q
    |||||    
T  45541719 aacag 45541723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 25459605 - 25459546
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacagac 168  Q
    ||||||||||| | ||| |||||||||| |||||| |||||||| ||||| |||||||||    
T  25459605 aaacaatctcacaagtgcttatgctagttgataagctcaaataaatcaatccaaacagac 25459546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 51929850 - 51929893
Alignment:
Q  123 gtgtttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    |||||||||||| |||||||| |||||||||||||| |||||||    
T  51929850 gtgtttatgctaatagataagctcaaataagtcaatccaaacag 51929893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 584159 - 584196
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaac 164  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  584159 ttatgctagtagataagctcaaataagtcaatccaaac 584196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 36189724 - 36189780
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||| ||||| | ||| |||| |||||| ||||| |||||||||||||||||||||    
T  36189724 aaacagtctcacaagtgcttatactagtaaataagctcaaataagtcaattcaaaca 36189780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 37593715 - 37593600
Alignment:
Q  53 aaataaaccgaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataa 152  Q
    |||||| | ||||| ||||||||||||||| ||||||||| |||||  | ||| | ||||| ||| | | |||||||||| |||| ||||| ||||||||    
T  37593715 aaataagctgaaaacagcttatgaacatgtcataagttgtgttcattagttttcccaaacagtctaacaagtgtttatgccagtatataagctcaaataa 37593616  T
Q  153 gtcaattcaaacagac 168  Q
    ||||| ||||||||||    
T  37593615 gtcaaatcaaacagac 37593600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 33723343 - 33723300
Alignment:
Q  123 gtgtttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    ||||||||| |||||||||||||||||||||||||| |||||||    
T  33723343 gtgtttatggtagtagataagttcaaataagtcaatccaaacag 33723300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 11893568 - 11893514
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaa 163  Q
    ||||||||||| | || ||| ||||||||||||||||||||||||||||| ||||    
T  11893568 aaacaatctcacaagtatttgtgctagtagataagttcaaataagtcaatccaaa 11893514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 4033992 - 4033935
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    ||||||||||| | |||||||||| |||||| |||||||||| ||||||| |||||||    
T  4033992 aaacaatctcacaagtgtttatgccagtagacaagttcaaatgagtcaatgcaaacag 4033935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 11695909 - 11696014
Alignment:
Q  62 gaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgt-ttatgctagtagataagttcaaataagtcaattc 160  Q
    ||||| |||||||| |||||| ||||  ||| | |||| ||||| | ||||||||||| ||| || |||||||| || ||||| |||||||||||||| |    
T  11695909 gaaaacagcttatggacatgtcataaactgtttccatatgctttcccaaacaatctcacaggagtcttatgctaataaataagctcaaataagtcaatcc 11696008  T
Q  161 aaacag 166  Q
    ||||||    
T  11696009 aaacag 11696014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 6231848 - 6231734
Alignment:
Q  52 gaaataaaccgaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaata 151  Q
    ||||||| | ||||| || ||||| |||||| || |||||| | |||  ||| | || |||||||||| |  |||||||||||||||||||  |||||||    
T  6231848 gaaataagctgaaaacagtttatggacatgtcattagttgtttccatgagctatccagaacaatctcacaaatgtttatgctagtagataacctcaaata 6231749  T
Q  152 agtcaattcaaacag 166  Q
    |  ||||||||||||    
T  6231748 aaccaattcaaacag 6231734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 152
Target Start/End: Complemental strand, 14737760 - 14737658
Alignment:
Q  51 ggaaataaaccgaaaa-tagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaa 149  Q
    |||||||||| ||||| ||||||||| |||||||||||||| | |||| | | ||| | ||||| ||||| | ||| |||| |||||| ||||| |||||    
T  14737760 ggaaataaactgaaaaatagcttatggacatgttataagttattttcacaagttttcccaaacagtctcacaagtgcttattctagtaaataagctcaaa 14737661  T
Q  150 taa 152  Q
    |||    
T  14737660 taa 14737658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 30014035 - 30013993
Alignment:
Q  128 tatgctagtagataagttcaaataagtcaattcaaacagactc 170  Q
    |||||||||||||||  |||||||||||||| |||||||||||    
T  30014035 tatgctagtagataaactcaaataagtcaatccaaacagactc 30013993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 49517182 - 49517220
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  49517182 ttatactagtagataagtttaaataagtcaattcaaaca 49517220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 11941376 - 11941413
Alignment:
Q  128 tatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  11941376 tatgctagtagaaaagttcaaataagtcaatacaaaca 11941413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 23373288 - 23373231
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    ||||||||||| | ||| ||||   |||||| ||||||||||||||||||||||||||    
T  23373288 aaacaatctcacaagtgcttatatcagtagacaagttcaaataagtcaattcaaacag 23373231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 29793870 - 29793911
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaacagac 168  Q
    ||||||| ||| |||| |||||||||||||||||||||||||    
T  29793870 ttatgctggtaaataaattcaaataagtcaattcaaacagac 29793911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 165
Target Start/End: Original strand, 35351192 - 35351221
Alignment:
Q  136 tagataagttcaaataagtcaattcaaaca 165  Q
    ||||||||||||||||||||||||||||||    
T  35351192 tagataagttcaaataagtcaattcaaaca 35351221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 48748570 - 48748509
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacagactc 170  Q
    ||||||||||| | |||||||||  | | |||||| ||||||||||||||||||||| ||||    
T  48748570 aaacaatctcacaagtgtttatgtcaatggataagctcaaataagtcaattcaaacatactc 48748509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 6292587 - 6292643
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||||||||| | ||| |||||  |||||||||| |||||||||||||| ||||||    
T  6292587 aaacaatctcaaaagtgcttatgtcagtagataagctcaaataagtcaatccaaaca 6292643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 7218049 - 7217993
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||||||||| | ||||||||||  ||||||||| | |||||||||||| ||||||    
T  7218049 aaacaatctcagaagtgtttatgccggtagataagcttaaataagtcaatccaaaca 7217993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 24460351 - 24460319
Alignment:
Q  134 agtagataagttcaaataagtcaattcaaacag 166  Q
    ||||||||||||||||||||||||| |||||||    
T  24460351 agtagataagttcaaataagtcaatccaaacag 24460319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 32859904 - 32859868
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaa 163  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  32859904 ttatgctagtagataagctcaagtaagtcaattcaaa 32859868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 51957353 - 51957313
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaacaga 167  Q
    |||||||||||||||||||||||||||  ||| ||||||||    
T  51957353 ttatgctagtagataagttcaaataagctaatacaaacaga 51957313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 43368722 - 43368618
Alignment:
Q  62 gaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattca 161  Q
    |||||||||| |||||||||| ||||||||| |||||| ||| ||  || || ||||| |  || ||||| ||||||||||| |||||||||||||| ||    
T  43368722 gaaaatagctaatgaacatgtcataagttgttttcataagctgttacaaccagtctcacaaatgcttatgttagtagataagatcaaataagtcaatcca 43368623  T
Q  162 aacag 166  Q
    |||||    
T  43368622 aacag 43368618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 4763995 - 4764046
Alignment:
Q  115 tctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| |||||||    
T  4763995 tctcataggtgcttatgctagtggataagttcaaataagtcaatccaaacag 4764046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 39881734 - 39881647
Alignment:
Q  71 ttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtcaat 158  Q
    |||||||||||| ||||| | | |||| | ||| ||| ||||||||||| | |||||||||| | |||||||||||||||||||||||    
T  39881734 ttatgaacatgtcataagctattttcacaagctcttccaaacaatctcacaagtgtttatgccaatagataagttcaaataagtcaat 39881647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 7918781 - 7918700
Alignment:
Q  84 ataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    ||||||||| |||||| ||| | | ||||| ||||| | ||||||||||||||||||||||| |||||| |||||||||||||    
T  7918781 ataagttgttttcataagctctcccaaacagtctcacaagtgtttatgctagtagataagtttaaataa-tcaattcaaacag 7918700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 39049320 - 39049401
Alignment:
Q  62 gaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataag 143  Q
    ||||| |||||||  |||||||||||||||| |||||| |||||   ||||||||||| |  ||||||||||||||||||||    
T  39049320 gaaaacagcttattgacatgttataagttgttttcataagctttcacaaacaatctcacaaatgtttatgctagtagataag 39049401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 12851215 - 12851330
Alignment:
Q  53 aaataaaccgaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatc--tcataggtgtttatgctagtagataagttcaaat 150  Q
    |||||| ||||||| | ||||||||||||||||||| ||| |||||| | ||| | ||||| ||  ||| | |||||||||| | ||| |||||||| ||    
T  12851215 aaataagccgaaaacatcttatgaacatgttataagctgttttcataagttttcccaaacagtctatcacaagtgtttatgccaataggtaagttcagat 12851314  T
Q  151 aagtcaattcaaacag 166  Q
    ||| |||| |||||||    
T  12851315 aagccaatccaaacag 12851330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 16162816 - 16162912
Alignment:
Q  70 cttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    |||||||||| || ||||| ||| |||||| | |||   ||||| ||||| | ||||||||||||||||||||  ||||||||| |||| |||||||    
T  16162816 cttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacag 16162912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 40728450 - 40728402
Alignment:
Q  51 ggaaataaaccgaaaatagcttatgaacatgttataagttgtattcata 99  Q
    |||||||||| ||||||| |||||||||||| |||||||||| ||||||    
T  40728450 ggaaataaactgaaaatatcttatgaacatgctataagttgttttcata 40728402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 9700110 - 9700153
Alignment:
Q  123 gtgtttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||    
T  9700110 gtgtttatgctagtagataagctcaaataagttaatccaaacag 9700153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 1117416 - 1117458
Alignment:
Q  123 gtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||    
T  1117416 gtgtttatgctagtatataagttcaagtaagtcaatccaaaca 1117458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 2458599 - 2458497
Alignment:
Q  51 ggaaataaaccgaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaat 150  Q
    |||||||||| ||||| ||||||||||||||  ||||| ||| |||||| | | | ||||| ||| ||| | ||||| || ||||| |||||| ||||||    
T  2458599 ggaaataaactgaaaacagcttatgaacatgccataagctgtcttcataagttctccaaaagaatgtcacaagtgttcatcctagttgataagctcaaat 2458500  T
Q  151 aag 153  Q
    |||    
T  2458499 aag 2458497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 7149233 - 7149267
Alignment:
Q  131 gctagtagataagttcaaataagtcaattcaaaca 165  Q
    |||||| ||||||||||||||||||||||||||||    
T  7149233 gctagttgataagttcaaataagtcaattcaaaca 7149267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 10758214 - 10758176
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  10758214 ttatgttagcagataagttcaaataagtcaattcaaaca 10758176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 39389148 - 39389094
Alignment:
Q  112 caatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    |||||||| | | |||||||  |||||||||||||||||||||| ||||||||||    
T  39389148 caatctcacaagcgtttatggcagtagataagttcaaataagtcgattcaaacag 39389094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 25872400 - 25872343
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    ||||||||||| | |||| ||||||||| ||||||||||| | ||||||| |||||||    
T  25872400 aaacaatctcacaagtgtgtatgctagttgataagttcaagttagtcaatccaaacag 25872343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 14926957 - 14926901
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||| ||||| | ||| |||||| |||| |||||||||||||||||||| ||||||    
T  14926957 aaacagtctcacaagtgcttatgccagtaaataagttcaaataagtcaatccaaaca 14926901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 38537628 - 38537676
Alignment:
Q  51 ggaaataaaccgaaaatagcttatgaacatgttataagttgtattcata 99  Q
    |||||||| ||||||||||||||||| |||||  |||||||| ||||||    
T  38537628 ggaaataagccgaaaatagcttatgagcatgtcgtaagttgttttcata 38537676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 23214950 - 23215006
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||||||| ||||||    
T  23214950 aaacagtctcataagtgtttatgctagtagataaggtcaaataagtcaatccaaaca 23215006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 43854998 - 43854957
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaacagac 168  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  43854998 ttatgttagtagataagttcaaataagccaattcaaacagac 43854957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 34036037 - 34036073
Alignment:
Q  134 agtagataagttcaaataagtcaattcaaacagactc 170  Q
    |||||||||| ||||||||||||||||||||||||||    
T  34036037 agtagataagctcaaataagtcaattcaaacagactc 34036073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 40252080 - 40252041
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  40252080 ttatgctagtagataagctcaaataagccaattcaaacag 40252041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 3468709 - 3468763
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaa 163  Q
    ||||| ||||| | ||||||||  |||||||||||||| ||||||||||||||||    
T  3468709 aaacagtctcaaaagtgtttattttagtagataagttcgaataagtcaattcaaa 3468763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 25833419 - 25833453
Alignment:
Q  124 tgtttatgctagtagataagttcaaataagtcaat 158  Q
    |||||||| ||||||||||||||||||||||||||    
T  25833419 tgtttatgttagtagataagttcaaataagtcaat 25833453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 29363603 - 29363661
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacaga 167  Q
    ||||| ||||| | ||| ||||| ||||||||||||||||||||| |||| ||||||||    
T  29363603 aaacagtctcacaagtgcttatgttagtagataagttcaaataagccaatccaaacaga 29363661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 40598446 - 40598404
Alignment:
Q  123 gtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||    
T  40598446 gtgttcatgctagtagataagctcaaataagtcaatccaaaca 40598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 46281103 - 46281061
Alignment:
Q  123 gtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||    
T  46281103 gtgtttatgttagtagataagttcaaataagccaatccaaaca 46281061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 529471 - 529516
Alignment:
Q  123 gtgtttatgctagtagataagttcaaataagtcaattcaaacagac 168  Q
    |||||||||| |||||||||| |||||||||||||| ||| |||||    
T  529471 gtgtttatgccagtagataagctcaaataagtcaatccaatcagac 529516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 1418521 - 1418570
Alignment:
Q  116 ctcataggtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    |||||| ||| |||||| |||||||||| |||||||||||||| ||||||    
T  1418521 ctcataagtgcttatgccagtagataagctcaaataagtcaatccaaaca 1418570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 7513672 - 7513709
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaac 164  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  7513672 ttatgccagtagataagctcaaataagtcaattcaaac 7513709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 24967126 - 24967203
Alignment:
Q  79 atgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtca 156  Q
    |||||||||||||| | ||||  || ||| ||||| |||||||  ||||||| |||||||||||| ||||| ||||||    
T  24967126 atgttataagttgtttccataatctcttccaaacagtctcataaatgtttatactagtagataagctcaaaaaagtca 24967203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 30535602 - 30535715
Alignment:
Q  53 aaataaaccgaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataa 152  Q
    |||||| | ||||| |||||| |||||| | ||||||||| |||||| | | | ||||||| ||||  | |||||||||  |||| || |  ||||||||    
T  30535602 aaataacctgaaaacagcttacgaacatatcataagttgttttcataagttctccaaaacagtctctcaagtgtttatgtcagtaaattaactcaaataa 30535701  T
Q  153 gtcaattcaaacag 166  Q
    ||||||||||||||    
T  30535702 gtcaattcaaacag 30535715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 12792459 - 12792419
Alignment:
Q  123 gtgtttatgctagtagataagttcaaataagtcaattcaaa 163  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  12792459 gtgtttatgtaagtagataagttgaaataagtcaattcaaa 12792419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 19302513 - 19302481
Alignment:
Q  134 agtagataagttcaaataagtcaattcaaacag 166  Q
    |||||||||| ||||||||||||||||||||||    
T  19302513 agtagataagctcaaataagtcaattcaaacag 19302481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 15120232 - 15120336
Alignment:
Q  63 aaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaa 162  Q
    |||| |||| |||||||||| ||||||||| | |||| ||| | | |||||   ||| |  ||||||||||||||||||||||||||||||||||| |||    
T  15120232 aaaacagctaatgaacatgtcataagttgtttccataagctctcccaaacagattcacaactgtttatgctagtagataagttcaaataagtcaatccaa 15120331  T
Q  163 acaga 167  Q
    |||||    
T  15120332 acaga 15120336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 5902571 - 5902473
Alignment:
Q  62 gaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattca 161  Q
    ||||| || |||||||||||| ||||| ||| |||||| | | ||| ||||| ||||| | ||||||||||   ||||||||||||||||||||||||||    
T  5902571 gaaaacagtttatgaacatgtcataagctgttttcataagttcttccaaacagtctcacaagtgtttatgcc--tagataagttcaaataagtcaattca 5902474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 43529889 - 43529774
Alignment:
Q  53 aaataaaccgaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataa 152  Q
    |||||||| ||||||||||||||||||||  ||||| ||| ||||||   | | | ||||| | ||| | ||| |||| | | |||||||| ||||||||    
T  43529889 aaataaactgaaaatagcttatgaacatggcataagctgttttcataaattctcccaaacagtgtcagaagtgcttataccaatagataagctcaaataa 43529790  T
Q  153 gtcaattcaaacagac 168  Q
    ||||||||||||||||    
T  43529789 gtcaattcaaacagac 43529774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 6988214 - 6988275
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacagactc 170  Q
    |||||||||| |||||| ||||   ||||||||||||||||||||| |||||||| ||||||    
T  6988214 aaacaatctcgtaggtgattatatcagtagataagttcaaataagttaattcaaaaagactc 6988275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 9478058 - 9478101
Alignment:
Q  115 tctcataggtgtttatgctagtagataagttcaaataagtcaat 158  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||    
T  9478058 tctcataagtgtttgtgctaatagataagttcaaataagtcaat 9478101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 10563517 - 10563478
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    ||||||| |||||||||||||||||||||||| |||||||    
T  10563517 ttatgctggtagataagttcaaataagtcaatccaaacag 10563478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 41905930 - 41905835
Alignment:
Q  70 cttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||||||||||  ||||||||| |||||| ||| |    || | ||||||| |||||||||| | || ||||||||||||||||||| |||||||    
T  41905930 cttatgaacatgcaataagttgttttcataagctctctcgaagagtctcataagtgtttatgcaaataaataagttcaaataagtcaaatcaaaca 41905835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 43259948 - 43259986
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  43259948 ttatgctagtagataagttcaaataagccaatccaaaca 43259986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 17976326 - 17976289
Alignment:
Q  126 tttatgctagtagataagttcaaataagtcaattcaaa 163  Q
    |||||| || ||||||||||||||||||||||||||||    
T  17976326 tttatgataatagataagttcaaataagtcaattcaaa 17976289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 18179062 - 18179103
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaacagac 168  Q
    ||||| ||||||||||| |||||||||||||| |||||||||    
T  18179062 ttatgttagtagataagctcaaataagtcaatccaaacagac 18179103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 5043517 - 5043481
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaa 163  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  5043517 ttatgctagtagataaggtcaaataagtcaatccaaa 5043481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 33503111 - 33503155
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaacagactca 171  Q
    ||||||||||||||||| ||||||||| |||| ||||||| ||||    
T  33503111 ttatgctagtagataagctcaaataagccaatacaaacaggctca 33503155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 11457152 - 11457241
Alignment:
Q  68 agcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtcaa 157  Q
    |||||||| |||||| ||||||||| | |||| ||| ||||||||| ||||| | |||||| ||| | |||||||| |||||||||||||    
T  11457152 agcttatggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtgtttctgccaatagataagctcaaataagtcaa 11457241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 5946524 - 5946490
Alignment:
Q  124 tgtttatgctagtagataagttcaaataagtcaat 158  Q
    |||||||||||||||||||||||||||||||||||    
T  5946524 tgtttatgctagtagataagttcaaataagtcaat 5946490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 6717223 - 6717268
Alignment:
Q  123 gtgtttatgctagtagataagttcaaataagtcaattcaaacagac 168  Q
    ||||||||||||| ||||||| | ||||||||||||||||||||||    
T  6717223 gtgtttatgctagcagataagcttaaataagtcaattcaaacagac 6717268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 11297227 - 11297110
Alignment:
Q  53 aaataaaccgaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataa 152  Q
    |||||| | |||||||||| ||  ||||||  |||||||| | |||| ||| ||  ||||| ||| | | |||||||||| | |||||||| | ||||||    
T  11297227 aaataagctgaaaatagctaattgacatgtcttaagttgtttccataagctctttcaaacagtcttacaagtgtttatgccactagataagcttaaataa 11297128  T
Q  153 gtcaattcaaacagactc 170  Q
    ||||||||||||||||||    
T  11297127 gtcaattcaaacagactc 11297110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 32172690 - 32172791
Alignment:
Q  51 ggaaataaaccgaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaat 150  Q
    |||||||| | |||||| ||||||| |||||| ||||||||| | |||| ||| | | |||| |||||| | ||| ||||||||||| ||||| ||||||    
T  32172690 ggaaataagctgaaaatggcttatggacatgtcataagttgtttccataagctctcccaaactatctcacaagtgcttatgctagtatataagctcaaat 32172789  T
Q  151 aa 152  Q
    ||    
T  32172790 aa 32172791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 152
Target Start/End: Complemental strand, 37611248 - 37611147
Alignment:
Q  51 ggaaataaaccgaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaat 150  Q
    |||||||| | ||||| ||||||||||||||| | ||||||| |||||| ||| |   ||||||||||| | ||  || ||| |||||||||||||||||    
T  37611248 ggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagtacttgtgccagtagataagttcaaat 37611149  T
Q  151 aa 152  Q
    ||    
T  37611148 aa 37611147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 152
Target Start/End: Complemental strand, 37787978 - 37787877
Alignment:
Q  51 ggaaataaaccgaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaat 150  Q
    |||||||| | ||||| ||||||||||||||| | ||||||| |||||| ||| |   ||||||||||| | ||  || ||| |||||||||||||||||    
T  37787978 ggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagtacttgtgccagtagataagttcaaat 37787879  T
Q  151 aa 152  Q
    ||    
T  37787878 aa 37787877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 31723906 - 31723954
Alignment:
Q  115 tctcataggtgtttatgctagtagataagttcaaataagtcaattcaaa 163  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||| ||||    
T  31723906 tctcataagtgtttatgctagtacataagctcaaataagtcaatccaaa 31723954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 5563800 - 5563851
Alignment:
Q  113 aatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaac 164  Q
    ||||||| | ||||||||| | ||||||||||||||||||| ||||||||||    
T  5563800 aatctcacacgtgtttatgtttgtagataagttcaaataagccaattcaaac 5563851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 13508549 - 13508583
Alignment:
Q  123 gtgtttatgctagtagataagttcaaataagtcaa 157  Q
    |||||||||| ||||||||||||||||||||||||    
T  13508549 gtgtttatgccagtagataagttcaaataagtcaa 13508583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 36680078 - 36680032
Alignment:
Q  123 gtgtttatgctagtagataagttcaaataagtcaattcaaacagact 169  Q
    ||||||||||||| ||||||||| ||||||||| || ||||||||||    
T  36680078 gtgtttatgctagaagataagtttaaataagtcgatccaaacagact 36680032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 1899191 - 1899295
Alignment:
Q  51 ggaaataaaccgaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaat 150  Q
    |||||||| | ||||| | |||||| |||||| ||||| ||| ||  || ||| ||||||||| ||||| |  |||||||||||||| ||||| ||||||    
T  1899191 ggaaataagctgaaaacaacttatgcacatgtcataagctgttttg-taagctcttcaaaacagtctcacatatgtttatgctagtaaataagctcaaat 1899289  T
Q  151 aagtca 156  Q
    ||||||    
T  1899290 aagtca 1899295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 14331455 - 14331520
Alignment:
Q  103 ttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacagac 168  Q
    ||||| |||||||||||   ||| |||||  |||||||||| |||||||||||||| |||||||||    
T  14331455 ttttccaaacaatctcaagagtgcttatgacagtagataagctcaaataagtcaatccaaacagac 14331520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 14599347 - 14599290
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    ||||||||| | | ||||||||||||||| |||||||||||||| | ||| |||||||    
T  14599347 aaacaatcttacaagtgtttatgctagtaaataagttcaaataactgaatccaaacag 14599290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 36542258 - 36542205
Alignment:
Q  112 caatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    |||||||||| ||| ||||| ||||||||||| ||||| ||| |||||||||||    
T  36542258 caatctcataagtgcttatgttagtagataagctcaaacaagccaattcaaaca 36542205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 9174927 - 9174967
Alignment:
Q  125 gtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    |||||||||| |||||||| |||||||||||||| ||||||    
T  9174927 gtttatgctaatagataagctcaaataagtcaatccaaaca 9174967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 12460013 - 12459917
Alignment:
Q  72 tatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacagac 168  Q
    ||||||||||| ||||||||| |||||| | | | | ||||| ||||| ||||| |||||  || |||||||   |||||||||||| |||||||||    
T  12460013 tatgaacatgtcataagttgttttcataggttctcccaaacagtctcacaggtgcttatgtcagcagataagccgaaataagtcaatccaaacagac 12459917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 14257567 - 14257599
Alignment:
Q  133 tagtagataagttcaaataagtcaattcaaaca 165  Q
    |||||||||||||||||||||||||| ||||||    
T  14257567 tagtagataagttcaaataagtcaatccaaaca 14257599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 17369323 - 17369355
Alignment:
Q  134 agtagataagttcaaataagtcaattcaaacag 166  Q
    ||||||||||||||||||||||||| |||||||    
T  17369323 agtagataagttcaaataagtcaatccaaacag 17369355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 17756343 - 17756303
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaacaga 167  Q
    ||||||||||||||||| | ||||||||||||| |||||||    
T  17756343 ttatgctagtagataagctaaaataagtcaatttaaacaga 17756303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 27565169 - 27565129
Alignment:
Q  123 gtgtttatgctagtagataagttcaaataagtcaattcaaa 163  Q
    |||||||| |||||| |||||||||||||||||||| ||||    
T  27565169 gtgtttattctagtacataagttcaaataagtcaatccaaa 27565129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 34975459 - 34975514
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||| ||||||| ||| ||||| ||||||||||| || ||||||||||||||||||    
T  34975459 aaacagtctcataagtgattatgttagtagataagctc-aataagtcaattcaaaca 34975514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 2455858 - 2455958
Alignment:
Q  62 gaaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattca 161  Q
    |||||||| |||||  ||||| ||||||||| | |||| ||| ||| ||||||||||  | ||| ||||||  ||||||||| |||||||||||||||||    
T  2455858 gaaaatagtttatgggcatgtcataagttgtttccataagctcttctaaacaatctcgcaagtgcttatgccggtagataagctcaaataagtcaattca 2455957  T
Q  162 a 162  Q
    |    
T  2455958 a 2455958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 13908349 - 13908391
Alignment:
Q  123 gtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    |||||||||  ||||||||||||||||||||||||||||||||    
T  13908349 gtgtttatgtcagtagataagttcaaataagtcaattcaaaca 13908391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 32205970 - 32205931
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  32205970 ttatgctagtagataaggtcaaataagtcaatccaaacag 32205931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 13907978 - 13908016
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  13907978 ttatgttagtagaaaagttcaaataagtcaattcaaaca 13908016  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 31623670 - 31623704
Alignment:
Q  134 agtagataagttcaaataagtcaattcaaacagac 168  Q
    ||||||||| |||||||||||||||||||||||||    
T  31623670 agtagataaattcaaataagtcaattcaaacagac 31623704  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 34429703 - 34429646
Alignment:
Q  95 tcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataa 152  Q
    ||||| ||||||| ||||||| ||  | ||||||||||||||||||||| ||||||||    
T  34429703 tcataagcttttccaaacaatatctcaagtgtttatgctagtagataagctcaaataa 34429646  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 324079 - 324115
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaa 163  Q
    |||||||||| |||||||||||||||| |||||||||    
T  324079 ttatgctagttgataagttcaaataagccaattcaaa 324115  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 2112238 - 2112278
Alignment:
Q  52 gaaataaaccgaaaatagcttatgaacatgttataagttgt 92  Q
    ||||||||||||||| | ||||||||||||| |||||||||    
T  2112238 gaaataaaccgaaaacaacttatgaacatgtcataagttgt 2112278  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 8010395 - 8010435
Alignment:
Q  52 gaaataaaccgaaaatagcttatgaacatgttataagttgt 92  Q
    ||||||||| ||||||||||||||||||||| || ||||||    
T  8010395 gaaataaactgaaaatagcttatgaacatgtcatgagttgt 8010435  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 12111080 - 12111116
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaa 163  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  12111080 ttatgctagtagataagctcaaataagtcaatccaaa 12111116  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 34531509 - 34531553
Alignment:
Q  123 gtgtttatgctagtagataagttcaaataagtcaattcaaacaga 167  Q
    ||||||||||||| ||||||| |||||| ||||||| ||||||||    
T  34531509 gtgtttatgctaggagataagctcaaatcagtcaatccaaacaga 34531553  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 28615429 - 28615493
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacagactcata 173  Q
    ||||||||||| | ||||||||||||||||||||  | |||||||||||| ||||||||| ||||    
T  28615429 aaacaatctcacaagtgtttatgctagtagataaacttaaataagtcaatccaaacagacccata 28615493  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 46714953 - 46714909
Alignment:
Q  122 ggtgtttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||    
T  46714953 ggtgtttatgccagtagataagttcaaataagccaattcaaacag 46714909  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 39691106 - 39691067
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaacag 166  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  39691106 ttatgctagtagataagctcaaataagtcaattcaaacag 39691067  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 19429804 - 19429860
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||||||||| | ||| |||||| |||||||||||||||||||||| || ||||||    
T  19429804 aaacaatctcacatgtgcttatgcgagtagataagttcaaataagtcgatccaaaca 19429860  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 46013286 - 46013227
Alignment:
Q  111 acaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacagactc 170  Q
    ||||||||| | ||||||||||| |||||||||||||| ||| |||||| ||||| ||||    
T  46013286 acaatctcacaagtgtttatgctggtagataagttcaattaaatcaattgaaacatactc 46013227  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 46247302 - 46247361
Alignment:
Q  111 acaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacagactc 170  Q
    ||||||||| | ||||||||||| |||||||||||||| ||| |||||| ||||| ||||    
T  46247302 acaatctcacaagtgtttatgctggtagataagttcaattaaatcaattgaaacatactc 46247361  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 3637345 - 3637299
Alignment:
Q  117 tcataggtgtttatgctagtagataagttcaaataagtcaattcaaa 163  Q
    ||||| |||||||||||| |||||||| |||||||||||||| ||||    
T  3637345 tcataagtgtttatgctaatagataagctcaaataagtcaatccaaa 3637299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 25309312 - 25309346
Alignment:
Q  134 agtagataagttcaaataagtcaattcaaacagac 168  Q
    ||||||||||||||||||||||||| |||||||||    
T  25309312 agtagataagttcaaataagtcaatccaaacagac 25309346  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 47399597 - 47399639
Alignment:
Q  126 tttatgctagtagataagttcaaataagtcaattcaaacagac 168  Q
    ||||||| |||| |||||||||||||||| |||||||||||||    
T  47399597 tttatgccagtatataagttcaaataagttaattcaaacagac 47399639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 54277297 - 54277239
Alignment:
Q  110 aacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacagac 168  Q
    |||| ||||||| |||||||||  | |||||||||||||||||||||||  ||||||||    
T  54277297 aacagtctcataagtgtttatgtcactagataagttcaaataagtcaatctaaacagac 54277239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 21953386 - 21953427
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaacagac 168  Q
    |||||||| |||||||| |||||||||||||| |||||||||    
T  21953386 ttatgctactagataagctcaaataagtcaatccaaacagac 21953427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 35571588 - 35571547
Alignment:
Q  127 ttatgctagtagataagttcaaataagtcaattcaaacagac 168  Q
    ||||||||||||||||| ||||||||| |||| |||||||||    
T  35571588 ttatgctagtagataagctcaaataagccaatccaaacagac 35571547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 53315375 - 53315480
Alignment:
Q  63 aaaatagcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaa 162  Q
    ||||||||||||| |||||| ||| ||||| |||||| ||| |   ||| | ||| ||| ||| |||| | ||| |||||| |||||||||||||| |||    
T  53315375 aaaatagcttatggacatgtgatatgttgttttcataagctctcacaaatagtcttatatgtgcttataccagtggataagctcaaataagtcaatccaa 53315474  T
Q  163 acagac 168  Q
    ||||||    
T  53315475 acagac 53315480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 2811566 - 2811622
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaaca 165  Q
    ||||| |||||||  || |||||| |||||||||  |||||||||||||||||||||    
T  2811566 aaacagtctcataaatgcttatgccagtagataacctcaaataagtcaattcaaaca 2811622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 7368070 - 7367970
Alignment:
Q  68 agcttatgaacatgttataagttgtattcatacgcttttcaaaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacaga 167  Q
    ||||||| ||||||| ||||| ||| |||||  ||| | | ||||| ||||| | | ||||||||  ||||||||  |||||||||||||| ||||||||    
T  7368070 agcttataaacatgtcataagctgttttcatgagctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataagtcaatccaaacaga 7367971  T
Q  168 c 168  Q
    |    
T  7367970 c 7367970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 11264396 - 11264456
Alignment:
Q  109 aaacaatctcataggtgtttatgctagtagataagttcaaataagtcaattcaaacagact 169  Q
    ||||| ||||| || ||||||||||||||||||   ||||||||| |||| ||||||||||    
T  11264396 aaacagtctcacagatgtttatgctagtagatagactcaaataagccaatccaaacagact 11264456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 22666759 - 22666711
Alignment:
Q  51 ggaaataaaccgaaaatagcttatgaacatgttataagttgtattcata 99  Q
    |||||||||| ||||||||||||||||||| | ||||||| | ||||||    
T  22666759 ggaaataaactgaaaatagcttatgaacatatcataagtttttttcata 22666711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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