View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12539_low_4 (Length: 461)
Name: NF12539_low_4
Description: NF12539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12539_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 11 - 446
Target Start/End: Complemental strand, 31528123 - 31527688
Alignment:
| Q |
11 |
caaaggatgttgtggaactggcacatttgaagtaactccattgtgtaatgagctcacacctgtgtgtgatgatgcttcaaaatatgtattttgggacagt |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31528123 |
caaaggatgttgtggaactggcacatttgaagtaactccattgtgtaatgagctcacacctgtgtgtgatgatgcttcaaaatatgtattttgggacagt |
31528024 |
T |
|
| Q |
111 |
gtgcatccaagtgaagcaaccaacaagtatattgctaaatacatggaattggaagttctacccaagttccaatttcacaggaattgtaaatttgatgtct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31528023 |
gtgcatccaagtgaagcaaccaacaagtatattgctaaatacatggaattggaagttctacccaagttccagtttcacaggaattgtaaatttgatgtct |
31527924 |
T |
|
| Q |
211 |
agagcttccaacttcatttgtatatagtacaaagaatatgaaatccatttgggagtccttgtaattcatttatttgtagtagaaaaattacaatgttatt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31527923 |
agagcttccaacttcatttgtatatagtacaaagaatatgaaatccatttgggagtccttgtaattcattaatttgtagtagaaaaattacaatgttatt |
31527824 |
T |
|
| Q |
311 |
tacataatggatcaatgtagtagataaatctttgcattaagttcagtgatggttctaactcccaagcgtggttgaatcagtgtagaaggtataaaatatc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31527823 |
tacataatggatcaatgtagtagataaatctttgcattaagttcagtgatggttctaactcccaagcgtggttgaatcagtgtagaaggtataaaatatc |
31527724 |
T |
|
| Q |
411 |
aaggttttatctctacaaaaatagatatgttaacta |
446 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31527723 |
aaggttttatctctacaaaaatagatatgttaacta |
31527688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 40845656 - 40845400
Alignment:
| Q |
11 |
caaaggatgttgtggaactggcacatttgaagtaactccattgtgtaatgagctcacacctgtgtgtgatgatgcttcaaaatatgtattttgggacagt |
110 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||| |
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| T |
40845656 |
caaaggatattgcggaactggcacatttgaagtaactccattgtgcaatgaactcacacctgtatgtgatgacgcttctaaatatgtattttgggacagt |
40845557 |
T |
|
| Q |
111 |
gtgcatccaagtgaagcaaccaacaagtatattgctaaatacatggaattggaagttctacccaagttccaatttcacaggaattgtaaatttgat---- |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
40845556 |
gtgcatccaagtgaagcaaccaacaagtatattgctaaatacttagaattggaagttctacccaagtttcaatttcataggaattgtaaatttgattgaa |
40845457 |
T |
|
| Q |
207 |
gtctagagcttccaacttcatttgtatatagtacaaagaatatgaaatccatttggg |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40845456 |
gtctagagcttccaacttcatttgtatatagtacaaagaatatgaaatccatttggg |
40845400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 31497373 - 31497083
Alignment:
| Q |
11 |
caaaggatgttgtggaactggcacatttgaagtaactccattgtgtaatgagctcacacctgtgtgtgatgatgcttcaaaatatgtattttgggacagt |
110 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
31497373 |
caaagggtgttgtggaactggcacatttgaagtaactccattgtgtaatgaactcacacctgtatgtgatgacgcttcaaaatatgtattttgggacagt |
31497274 |
T |
|
| Q |
111 |
gtgcatccaagtgaagcaaccaacaagtatattgctaaatacatggaattggaagttctacccaagttccaatttcacaggaattgtaaatttgat---- |
206 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| || || | ||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
31497273 |
gtgcatccaagtgaagcaaccaacaaatatattgcaaagtatttagaattggaagttctaccaaagttccaatttcataggaattgtaaatttgattgaa |
31497174 |
T |
|
| Q |
207 |
gtctagagcttccaacttcatttgtatatagtacaaagaatatgaaatccatttgggagtccttgtaattcatttatttgtagtagaaaaat |
298 |
Q |
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| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||| ||||||||||| ||||| |
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| T |
31497173 |
gactagagcttcctacttcatttgtatatagttcaaagaatatgaaatccattt-ggagtctttgtaattcattcatttgtagtagtaaaat |
31497083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 442
Target Start/End: Complemental strand, 31496984 - 31496935
Alignment:
| Q |
392 |
gtagaaggtataaaatatcaaggttttatctctacaaaaatagatatgtta |
442 |
Q |
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|||||||| |||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
31496984 |
gtagaagggataaaatatcaagg-tttatctttacaaaaatagataagtta |
31496935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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