View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12539_low_5 (Length: 385)
Name: NF12539_low_5
Description: NF12539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12539_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 44786848 - 44786485
Alignment:
| Q |
19 |
acttcattttaccaacacgaagtaactaatcataattgatataacaacattannnnnnnnnnaaattcacaatggcttatgtgatgataggaggagattg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44786848 |
acttcattttaccaacacgaagtaactaatcataattgatataacaacattattatttttttaaattcacaatggcttatgtgatgataggaggagattg |
44786749 |
T |
|
| Q |
119 |
agatcgatggtagagttctacgagtaggaaagactatagctgttataagcgtggagttaaggaagnnnnnnnctggctaaatttttgctcaggggcgtca |
218 |
Q |
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| T |
44786748 |
agatcgatggcagagtcctacgagtaggaaagactatagctgttataagcgtggagttaaggaagaaaaaaactggccaaatttttgctcaggggcgtca |
44786649 |
T |
|
| Q |
219 |
taccaaatatataccctttatcagtaaaatgtgaaactgagaatgaagtatagaagaggaattatgacatatttgaggtagaaaactccctcttcgtcca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44786648 |
taccaaatatataccctttatcagtaaaatgtgaaactgagaataaagtatagaagaggaattatgacatatttgaggtagaaaactccctcttcgtcca |
44786549 |
T |
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| Q |
319 |
tgattc----------aaaagattggatgggaaattccattgggttttgtttttgttttcattc |
372 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44786548 |
tgattcaaaaaactataaaagattggatgggaaattccgttgggttttgtttttgttttcattc |
44786485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 106 - 311
Target Start/End: Complemental strand, 44788439 - 44788234
Alignment:
| Q |
106 |
taggaggagattgagatcgatggtagagttctacgagtaggaaagactatagctgttataagcgtggagttaaggaagnnnnnnnctggctaaatttttg |
205 |
Q |
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| T |
44788439 |
taggaggagattgagatcgatgctaaagttctacgagcagggaagggtatggctgttgtaagcgtggagttcaggaagaaaaagactggccaaatttttg |
44788340 |
T |
|
| Q |
206 |
ctcaggggcgtcataccaaatatataccctttatcagtaaaatgtgaaactgagaatgaagtatagaagaggaattatgacatatttgaggtagaaaact |
305 |
Q |
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||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| || | ||||||| | || || | |||||||||||||||| |
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| T |
44788339 |
ctcagggacgtcataccaaatatatttcctttatcactaaaatgtgaaactgagaacaaatgacagaagagcatatacgaaacttttgaggtagaaaact |
44788240 |
T |
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| Q |
306 |
ccctct |
311 |
Q |
| |
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|||||| |
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| T |
44788239 |
ccctct |
44788234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 260
Target Start/End: Complemental strand, 44792121 - 44791973
Alignment:
| Q |
112 |
gagattgagatcgatggtagagttctacgagtaggaaagactatagctgttataagcgtggagttaaggaagnnnnnnnctggctaaatttttgctcagg |
211 |
Q |
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||||||||||| |||| ||||||| ||||| |||||||| || |||||||| ||||||||||||| | |||| |||| || |||||||||| | |
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| T |
44792121 |
gagattgagattgatgctagagttttacgaataggaaaggctgtagctgttgtaagcgtggagttcaagaagaaaaagactggacaagtttttgctcaag |
44792022 |
T |
|
| Q |
212 |
ggcgtcataccaaatatataccctttatcagtaaaatgtgaaactgaga |
260 |
Q |
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| T |
44792021 |
ggcgtcataccaaatatattccctttgtaagtaaaatgtgaaaccgaga |
44791973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 90 - 253
Target Start/End: Complemental strand, 44800097 - 44799934
Alignment:
| Q |
90 |
atggcttatgtgatgataggaggagattgagatcgatggtagagttctacgagtaggaaagactatagctgttataagcgtggagttaaggaagnnnnnn |
189 |
Q |
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|||||||||| ||| ||||||||||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||| ||||| |||||| |
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| T |
44800097 |
atggcttatgcaatggtaggaggagattgagattgataacaaggttctacgagtaggaaatgctatagctgttgtaagcgtagagttcaggaagaaaaag |
44799998 |
T |
|
| Q |
190 |
nctggctaaatttttgctcaggggcgtcataccaaatatataccctttatcagtaaaatgtgaa |
253 |
Q |
| |
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| ||| ||||||||||||| |||||||||||||| ||| | |||||| ||||||||||||||| |
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| T |
44799997 |
acgggccaaatttttgctcaagggcgtcataccaagtatcttccctttgtcagtaaaatgtgaa |
44799934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 106 - 253
Target Start/End: Complemental strand, 44803930 - 44803783
Alignment:
| Q |
106 |
taggaggagattgagatcgatggtagagttctacgagtaggaaagactatagctgttataagcgtggagttaaggaagnnnnnnnctggctaaatttttg |
205 |
Q |
| |
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||||||||||||||||| |||| ||| |||||||||||||||||| | |||||||| ||||||||||||| |||||| | | | || |||||| |
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| T |
44803930 |
taggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttg |
44803831 |
T |
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| Q |
206 |
ctcaggggcgtcataccaaatatataccctttatcagtaaaatgtgaa |
253 |
Q |
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|||| ||||||| ||| |||||| | ||||||| ||||||||||||| |
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| T |
44803830 |
ctcaagggcgtcttacaaaatatcttccctttaggagtaaaatgtgaa |
44803783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 260
Target Start/End: Complemental strand, 44783823 - 44783654
Alignment:
| Q |
90 |
atggcttatgtgatgataggaggagattgagatcgatggtagagttctacgagtaggaaagactatagctgttataagcgtggagttaaggaagnnnnnn |
189 |
Q |
| |
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||||||||||| |||||||| ||||||||||| || | || |||||||||||||||||| |||||||||| ||||| ||||||| |||||| |
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| T |
44783823 |
atggcttatgtt-tgataggaagagattgagatagaagcaagggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaaag |
44783725 |
T |
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| Q |
190 |
nctggctaaatttttgctcaggggcgtcataccaaatatataccctttatcagtaaaatgtgaaactgaga |
260 |
Q |
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||||| || |||||||||| || |||||||||| |||| | || ||| |||||||||||||||||||| |
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| T |
44783724 |
actggccaagtttttgctcatggacgtcataccacatatctttccattactagtaaaatgtgaaactgaga |
44783654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 44797022 - 44796902
Alignment:
| Q |
106 |
taggaggagattgagatcgatggtagagttctacgagtaggaaagactatagctgttataagcgtggagttaaggaagnnnnnnnctggctaaatttttg |
205 |
Q |
| |
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||||||||||||||||| ||| || |||||| || |||||||| || |||||||| ||||||||||||| |||||| ||||| || |||||| |
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| T |
44797022 |
taggaggagattgagattgataccagggttctaagactaggaaaggctgtagctgttctaagcgtggagttgaggaagaaaaaaactggccaagtttttg |
44796923 |
T |
|
| Q |
206 |
ctcaggggcgtcataccaaat |
226 |
Q |
| |
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|||| ||||||||||| |||| |
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| T |
44796922 |
ctcaagggcgtcatacaaaat |
44796902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 311
Target Start/End: Original strand, 36681354 - 36681467
Alignment:
| Q |
197 |
aaatttttgctcaggggcgtcataccaaatatataccctttatcagtaaaatgtgaaactgagaatgaagtatagaagaggaattatgacatatttgagg |
296 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | ||||||||| || || || ||||||| |
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| T |
36681354 |
aaatttttgctcgggggcgtcataccaaatatattccctttatcagtaaaatgtgaaactgagaacaaaggacagaagaggatatacgaaat-tttgagg |
36681452 |
T |
|
| Q |
297 |
tagaaaactccctct |
311 |
Q |
| |
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||||||||||||||| |
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| T |
36681453 |
tagaaaactccctct |
36681467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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