View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12539_low_7 (Length: 290)
Name: NF12539_low_7
Description: NF12539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12539_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 32487775 - 32488043
Alignment:
| Q |
5 |
gagaagcagagatggaagatcttaattaggctgcaatttttcataacatgatgattatgtcacaatatgaacaagaaataatactctgtagtgtactaag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32487775 |
gagaagcagagatggaagatcttaattaggctgcaatttttcataacatgatgattatgtcacaatatgaacaagaaataatactctgtagtgtactaag |
32487874 |
T |
|
| Q |
105 |
acatcaaaatatgaacaagaaattaaagaactgtttaggaaaatgcagtaaccaatgttggatctattgactgaggcacattaacaccaacnnnnnnnnc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
32487875 |
acatcaaaatatgaacaagaaattaaagaactgtttaggaaaatgcagtaaccaatgttggatctattgactgaggcacattaacaccca-aaaaaaaac |
32487973 |
T |
|
| Q |
205 |
ttgatagtgacaatttatagtagttggcatgaactgacctagatatatattgcacattatatgatacatg |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32487974 |
ttgatagtgacaatttatagtagttggcatgaactgacttagatatatattgcacattatatgatacatg |
32488043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University