View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254-Insertion-1 (Length: 330)
Name: NF1254-Insertion-1
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254-Insertion-1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 330
Target Start/End: Complemental strand, 16941311 - 16940988
Alignment:
| Q |
8 |
taaatttcatttcataacaaattttccaagcaatgagttagggttggttgattggaatactattgcaaccaatgttatatatatagagaga--aatttag |
105 |
Q |
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| T |
16941311 |
taaatttcatttcataacaaattttccaagcaatgagttagggttggttgattggaatactattgcaaccaatgttatatatatagagagagaaatttag |
16941212 |
T |
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| Q |
106 |
aggacacatgccaagtgaaatatttgatgaatgcatgtaaagttttggaggtatttatataaagtgtagtgtgtcaagattgataattattatgaatgtg |
205 |
Q |
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| T |
16941211 |
aggacacatgccaagtgaaatatttgatgaatgcatccaaagttttggaggtatttatataaagtgtagtgtgtcaagattgataattattatgaatgtg |
16941112 |
T |
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| Q |
206 |
acaaataaaattggtcttatcgtaaggatttggctcataccctactaaaggttaaaggagtttagttatatttttatcttccgttgtcgtcgtttgaatt |
305 |
Q |
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| T |
16941111 |
acaaataaaattggtcttatcgtaaggatttggctcataccttac-aaaggtcaaaggagtttggttatatttttatcttccgttgtcgtcgtttgaatt |
16941013 |
T |
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| Q |
306 |
ttgtttatggataatgtgtaagtaa |
330 |
Q |
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| T |
16941012 |
ttgtttatggataatgtgtaagtaa |
16940988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 330
Target Start/End: Complemental strand, 17011976 - 17011653
Alignment:
| Q |
8 |
taaatttcatttcataacaaattttccaagcaatgagttagggttggttgattggaatactattgcaaccaatgttatatatatagagaga--aatttag |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17011976 |
taaatttcatttcataacaaattttccaagcaatgagttagggttggttgattggaatactattgcaaccaatgttatatatatagagagagaaatttag |
17011877 |
T |
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| Q |
106 |
aggacacatgccaagtgaaatatttgatgaatgcatgtaaagttttggaggtatttatataaagtgtagtgtgtcaagattgataattattatgaatgtg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17011876 |
aggacacatgccaagtgaaatatttgatgaatgcatccaaagttttggaggtatttatataaagtgtagtgtgtcaagattgataattattatgaatgtg |
17011777 |
T |
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| Q |
206 |
acaaataaaattggtcttatcgtaaggatttggctcataccctactaaaggttaaaggagtttagttatatttttatcttccgttgtcgtcgtttgaatt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17011776 |
acaaataaaattggtcttatcgtaaggatttggctcataccttac-aaaggtcaaaggagtttggttatatttttatcttccgttgtcgtcgtttgaatt |
17011678 |
T |
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| Q |
306 |
ttgtttatggataatgtgtaagtaa |
330 |
Q |
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||||||||||||||||||||||||| |
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| T |
17011677 |
ttgtttatggataatgtgtaagtaa |
17011653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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