View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1254-Insertion-10 (Length: 517)

Name: NF1254-Insertion-10
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1254-Insertion-10
NF1254-Insertion-10
[»] chr1 (2 HSPs)
chr1 (363-507)||(45288327-45288478)
chr1 (125-210)||(48214124-48214210)
[»] chr4 (2 HSPs)
chr4 (363-500)||(31608309-31608453)
chr4 (224-261)||(55321889-55321926)
[»] scaffold0049 (1 HSPs)
scaffold0049 (157-241)||(64103-64186)
[»] chr3 (1 HSPs)
chr3 (157-241)||(22900429-22900512)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 363 - 507
Target Start/End: Complemental strand, 45288478 - 45288327
Alignment:
Q  363 tttactcataatcaagttctgaggtcaaagaaaaatgtgat--------ctcatggatggtaaattatcatttttatgttttactcatttgtttgatgtt 454  Q
    ||||||||||||||||| | ||||| ||||||||| |||||        |||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  45288478 tttactcataatcaagtgccgaggttaaagaaaaaggtgatatgagtctctcatggatgctaaattaccatttttatgttt-actcatttgtttgatgtt 45288380  T
Q  455 tataattgaaattggattttacaaatgttttattcaccttttattacggataa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45288379 tataattgaaattggattttacaaatgttttattcaccttttattacagataa 45288327  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 48214210 - 48214124
Alignment:
Q  125 gtgataactccatttgataagcacattgttg-aaattgaaattgcaggagctattgggttgagtcattcattctcaagataccttca 210  Q
    ||||||||| ||||||||| |||||| | || |||||  |||||||||||||||  | |||| |||||||||||||||||| |||||    
T  48214210 gtgataactgcatttgataggcacatagctgcaaattccaattgcaggagctatgagtttgaatcattcattctcaagatatcttca 48214124  T

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Target: chr4 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 363 - 500
Target Start/End: Original strand, 31608309 - 31608453
Alignment:
Q  363 tttactcataatcaagttctgaggtcaaagaaaaatgtgat--------ctcatggatggtaaattatcatttttatgttttactcatttgtttgatgtt 454  Q
    ||||||||||||||||| | ||||| ||||||||| |||||        |||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  31608309 tttactcataatcaagtgccgaggttaaagaaaaaggtgatatgagtctctcatggatgctaaattaccatttttatgttt-actcatttgtttgatgtt 31608407  T
Q  455 tataattgaaattggattttacaaatgttttattcaccttttatta 500  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  31608408 tataattgaaattggattttacaaatgttttattcaacttttatta 31608453  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 55321926 - 55321889
Alignment:
Q  224 aagaaatggtatgtgtttattttgtttcatattcgttt 261  Q
    |||||||||||||| |||||||||||||||||||||||    
T  55321926 aagaaatggtatgtttttattttgtttcatattcgttt 55321889  T

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Target: scaffold0049 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 64186 - 64103
Alignment:
Q  157 aattgaaattgcaggagctattgggttgagtcattcattctcaagataccttcatagaaaaagcaacaagaaatggtatgtgttt 241  Q
    ||||| ||||||||||||||| |||||||  |||||||||| |||||| ||||| |  |||||||| || |||||||||||||||    
T  64186 aattgcaattgcaggagctat-gggttgaaacattcattcttaagatatcttcacaacaaaagcaaaaacaaatggtatgtgttt 64103  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 22900429 - 22900512
Alignment:
Q  157 aattgaaattgcaggagctattgggttgagtcattcattctcaagataccttcatagaaaaagcaacaagaaatggtatgtgttt 241  Q
    ||||| ||||| ||||||||| ||||||| ||||||||||||||| || ||| | || ||||| ||||| ||| |||||||||||    
T  22900429 aattgcaattgtaggagctat-gggttgaatcattcattctcaaggtatcttgacagcaaaagaaacaacaaacggtatgtgttt 22900512  T

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