View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254-Insertion-11 (Length: 522)
Name: NF1254-Insertion-11
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254-Insertion-11 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 32 - 522
Target Start/End: Complemental strand, 10595712 - 10595231
Alignment:
| Q |
32 |
ctctaaatggaggtttaaaatattttctctaattggcttagcacaatttttgctcacaagtcacgtccatcatactcacaatttttgcactctaagaact |
131 |
Q |
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| T |
10595712 |
ctctaaatggaggtttaaaatattttctctaattggcttagcacaatttttgctcacaagtcacgtccatcatactcacaatttttgcactctaagaact |
10595613 |
T |
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| Q |
132 |
aaatggaggactgaccttgcccttgcagtgacaatgacccccgtttttggtgagaagaggtttcaccatcttctttctttgtttactttgatgaaaaact |
231 |
Q |
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| T |
10595612 |
aaatggaggactgaccttgcccttgcagtgacaatgacccccgtttttggtgagaagaggtttcaccatcttctttctttgtttactttgatgaaaaact |
10595513 |
T |
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| Q |
232 |
catttctaatattacactgctatttttcctcgaattgctctgcactttgaacatttgttttgtttttaccagaaatatttcattaaattgttttttctta |
331 |
Q |
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| T |
10595512 |
catttctaatattacactgctatttttcctcgaattgctctgcactttgaacatttgttttgtttttaccagaaatatttcattaaattgttttttatta |
10595413 |
T |
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| Q |
332 |
ccgtcacacaacactttcaaaataaagaagctagcaaataagataagaatctacaacacaataaataaatatcactttgaaatcatatatacatctttcg |
431 |
Q |
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| T |
10595412 |
ccgtcacacgacactttcaaaataaagaagctagcaaataagataagaatctacaacacaataaat---------tttgaaatcatatatacatctttca |
10595322 |
T |
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| Q |
432 |
gtaaattttacttctcaacaaccaaaaattatctttcacggttacnnnnnnngaaagtagagaaaaccaattccctcacaccaatctttca |
522 |
Q |
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| T |
10595321 |
gtaaattttacttctcaacgaccaaaaattatctttcacggttacaaaaaacgaaagtagagaaaaccaattccgtcacaccaatctttca |
10595231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 38138066 - 38138111
Alignment:
| Q |
275 |
actttgaacatttgttttgtttttaccagaaatatttcattaaatt |
320 |
Q |
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| T |
38138066 |
actttgaacatttgttttgttttaacaagaaatatttcattaaatt |
38138111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 323
Target Start/End: Original strand, 41799932 - 41799978
Alignment:
| Q |
277 |
tttgaacatttgttttgtttttaccagaaatatttcattaaattgtt |
323 |
Q |
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| T |
41799932 |
tttgatcatttgtcttgttttcactagaaatatttcattaaattgtt |
41799978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 281 - 467
Target Start/End: Original strand, 2941802 - 2941989
Alignment:
| Q |
281 |
aacatttgttttgtttttaccagaaatatttcattaaattgtt-ttttcttaccgtcacacaacactttcaaaataaagaagctagcaaataagataaga |
379 |
Q |
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| T |
2941802 |
aacatttgttttgtttttaccagaaatatttcattaaattgctgttttcttaccatcacaggacactttcaaaataaagaagttagcaaagaagatgacg |
2941901 |
T |
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| Q |
380 |
atctacaacacaataaataaata-tcactttgaaatcatatatacatctttcggtaaattttacttctcaacaaccaaaaattatcttt |
467 |
Q |
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| T |
2941902 |
atctacaacacattta-taaatactaattttcaaatcatatatacatctttccattaatttttcctctcaacaagaaaaaattatcttt |
2941989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 289 - 429
Target Start/End: Original strand, 33581873 - 33582007
Alignment:
| Q |
289 |
ttttgtttttaccagaaatatttcattaaattgttttttcttaccgtcacacaacactttcaaaataaagaagctagcaaataagataagaatctacaac |
388 |
Q |
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| T |
33581873 |
ttttgtttttgccacaaatacttcattaaattgttttttcttatcgtcacaagacactttcaaaatagtgaagttagcaaagaaaatgaggatctaaaac |
33581972 |
T |
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| Q |
389 |
acaataaataaatatcactttgaaatcatatatacatcttt |
429 |
Q |
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| T |
33581973 |
------aataaataccacttttaaatcatatatacatcttt |
33582007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 33581822 - 33581868
Alignment:
| Q |
186 |
aagaggtttcaccatcttctttctttgtttactttgatgaaaaactc |
232 |
Q |
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| T |
33581822 |
aagaggtttcaccatcttcttttttggtttactttaatgaaaaactc |
33581868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 3380546 - 3380593
Alignment:
| Q |
276 |
ctttgaacatttgttttgtttttaccagaaatatttcattaaattgtt |
323 |
Q |
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| T |
3380546 |
ctttgaacatttgttttgtttttaccagaaatattttattaaattgtt |
3380593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 10915697 - 10915773
Alignment:
| Q |
247 |
actgctatttttcctcgaattgctctgcactttgaacatttgttttgtttttaccagaaatatttcattaaattgtt |
323 |
Q |
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| T |
10915697 |
actgctatttttccttgggttgctaatcactttgagcatttgctttcgttttaccagaaatattttattaaaatgtt |
10915773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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