View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1254-Insertion-12 (Length: 846)

Name: NF1254-Insertion-12
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1254-Insertion-12
NF1254-Insertion-12
[»] chr3 (24 HSPs)
chr3 (498-846)||(8314231-8314592)
chr3 (360-440)||(8314054-8314134)
chr3 (349-421)||(1928386-1928458)
chr3 (360-435)||(42673234-42673309)
chr3 (349-435)||(10348737-10348823)
chr3 (349-435)||(26007557-26007643)
chr3 (349-435)||(27238495-27238581)
chr3 (349-427)||(27238846-27238924)
chr3 (349-435)||(40848550-40848636)
chr3 (349-427)||(48159927-48160005)
chr3 (498-538)||(8314907-8314947)
chr3 (360-435)||(22429534-22429609)
chr3 (360-435)||(53687929-53688004)
chr3 (386-440)||(8315044-8315098)
chr3 (349-435)||(24485051-24485137)
chr3 (349-435)||(40848899-40848985)
chr3 (349-427)||(48160279-48160357)
chr3 (351-435)||(42456134-42456217)
chr3 (360-435)||(36180595-36180670)
chr3 (349-435)||(3353490-3353575)
chr3 (349-435)||(22429188-22429274)
chr3 (349-435)||(24485398-24485484)
chr3 (349-427)||(42673007-42673085)
chr3 (349-427)||(53688249-53688327)
[»] chr4 (35 HSPs)
chr4 (17-315)||(4850900-4851199)
chr4 (137-315)||(4848073-4848251)
chr4 (349-425)||(50679372-50679448)
chr4 (349-435)||(4239304-4239390)
chr4 (349-435)||(28196376-28196462)
chr4 (349-435)||(28196711-28196797)
chr4 (349-425)||(50678809-50678885)
chr4 (349-435)||(169044-169130)
chr4 (349-435)||(9380679-9380765)
chr4 (349-435)||(25161908-25161994)
chr4 (349-435)||(32703588-32703674)
chr4 (349-435)||(48405991-48406077)
chr4 (349-433)||(9380337-9380421)
chr4 (349-425)||(36095847-36095922)
chr4 (349-425)||(36096423-36096499)
chr4 (351-435)||(39744062-39744146)
chr4 (360-435)||(169377-169452)
chr4 (360-435)||(9023618-9023693)
chr4 (360-435)||(39744403-39744478)
chr4 (349-435)||(9023274-9023360)
chr4 (361-435)||(25162251-25162325)
chr4 (349-435)||(32703255-32703341)
chr4 (351-425)||(43050639-43050713)
chr4 (349-435)||(48406323-48406409)
chr4 (360-433)||(43292078-43292151)
chr4 (361-425)||(43051200-43051264)
chr4 (360-427)||(293163-293230)
chr4 (88-119)||(5202739-5202770)
chr4 (233-288)||(5205497-5205552)
chr4 (371-418)||(11530154-11530201)
chr4 (360-435)||(23540190-23540265)
chr4 (349-432)||(39086564-39086647)
chr4 (349-427)||(44468869-44468947)
chr4 (285-318)||(5141124-5141157)
chr4 (349-434)||(12758143-12758228)
[»] chr1 (39 HSPs)
chr1 (616-843)||(39691252-39691493)
chr1 (501-592)||(39690981-39691071)
chr1 (578-693)||(39691088-39691210)
chr1 (360-440)||(39691933-39692013)
chr1 (349-427)||(28633750-28633828)
chr1 (349-435)||(48105054-48105140)
chr1 (349-433)||(9347156-9347240)
chr1 (349-425)||(49284439-49284515)
chr1 (349-433)||(50526412-50526496)
chr1 (349-432)||(13918476-13918559)
chr1 (360-435)||(20480208-20480283)
chr1 (360-435)||(26814735-26814810)
chr1 (360-435)||(26815057-26815132)
chr1 (360-435)||(48104719-48104794)
chr1 (349-435)||(999463-999549)
chr1 (349-435)||(21687405-21687491)
chr1 (349-427)||(27172145-27172223)
chr1 (349-435)||(32162981-32163067)
chr1 (349-435)||(50430019-50430105)
chr1 (361-425)||(6002279-6002343)
chr1 (498-538)||(39691817-39691857)
chr1 (349-425)||(49285003-49285079)
chr1 (360-435)||(28634095-28634170)
chr1 (360-435)||(50615559-50615634)
chr1 (360-435)||(50623387-50623462)
chr1 (349-427)||(9347497-9347575)
chr1 (386-440)||(39690832-39690886)
chr1 (349-427)||(46823873-46823951)
chr1 (349-435)||(46824216-46824302)
chr1 (360-425)||(6002842-6002907)
chr1 (362-435)||(21687068-21687141)
chr1 (351-435)||(6703492-6703576)
chr1 (362-434)||(20371081-20371152)
chr1 (349-435)||(27172480-27172565)
chr1 (349-427)||(42611215-42611293)
chr1 (349-427)||(44911055-44911133)
chr1 (349-435)||(49317781-49317867)
chr1 (349-427)||(49318112-49318190)
chr1 (360-425)||(19008698-19008763)
[»] chr8 (24 HSPs)
chr8 (578-785)||(15443083-15443311)
chr8 (501-595)||(15442974-15443067)
chr8 (361-440)||(15442805-15442884)
chr8 (349-425)||(9823309-9823385)
chr8 (349-425)||(13027229-13027305)
chr8 (349-425)||(39723996-39724072)
chr8 (360-435)||(37396749-37396824)
chr8 (349-435)||(20861576-20861662)
chr8 (349-435)||(24473706-24473792)
chr8 (360-425)||(9822789-9822854)
chr8 (349-425)||(13026665-13026741)
chr8 (498-538)||(15443619-15443659)
chr8 (349-425)||(39723432-39723508)
chr8 (360-435)||(34498163-34498237)
chr8 (349-427)||(6199042-6199120)
chr8 (351-425)||(13936754-13936827)
chr8 (360-425)||(22851431-22851496)
chr8 (351-435)||(6198690-6198774)
chr8 (349-436)||(9623532-9623619)
chr8 (360-435)||(17431328-17431403)
chr8 (360-435)||(33727043-33727118)
chr8 (361-435)||(24473385-24473459)
chr8 (349-435)||(37397083-37397169)
chr8 (360-425)||(3307379-3307444)
[»] chr5 (23 HSPs)
chr5 (349-435)||(3888600-3888686)
chr5 (349-434)||(3888269-3888354)
chr5 (349-435)||(19514556-19514642)
chr5 (349-434)||(22729379-22729464)
chr5 (349-425)||(18817559-18817635)
chr5 (349-427)||(12498597-12498675)
chr5 (349-435)||(12498866-12498952)
chr5 (349-435)||(21207256-21207342)
chr5 (349-435)||(26571102-26571188)
chr5 (351-440)||(42919336-42919425)
chr5 (349-425)||(18816982-18817058)
chr5 (498-538)||(42919517-42919557)
chr5 (362-425)||(11350850-11350913)
chr5 (360-435)||(26570770-26570845)
chr5 (360-435)||(34147180-34147255)
chr5 (352-435)||(41072152-41072235)
chr5 (360-435)||(43464130-43464205)
chr5 (349-427)||(43463785-43463863)
chr5 (349-425)||(11351376-11351451)
chr5 (360-435)||(25940562-25940637)
chr5 (360-435)||(34147448-34147523)
chr5 (349-435)||(2817179-2817264)
chr5 (349-435)||(11316912-11316998)
[»] chr2 (19 HSPs)
chr2 (349-425)||(2638850-2638926)
chr2 (349-435)||(8851178-8851264)
chr2 (349-435)||(26692758-26692844)
chr2 (349-425)||(2639430-2639506)
chr2 (349-425)||(7591231-7591307)
chr2 (349-425)||(26841617-26841693)
chr2 (349-425)||(26842186-26842262)
chr2 (360-435)||(7664289-7664364)
chr2 (360-435)||(7664611-7664686)
chr2 (700-765)||(5379201-5379266)
chr2 (349-434)||(17851341-17851426)
chr2 (349-432)||(16911210-16911293)
chr2 (360-435)||(26692437-26692512)
chr2 (349-435)||(16910857-16910943)
chr2 (360-427)||(7979606-7979673)
chr2 (360-435)||(8851521-8851595)
chr2 (349-435)||(5793477-5793563)
chr2 (349-427)||(19141795-19141873)
chr2 (360-425)||(7591798-7591863)
[»] chr7 (26 HSPs)
chr7 (349-435)||(10533064-10533150)
chr7 (349-435)||(37888863-37888949)
chr7 (349-425)||(44599519-44599595)
chr7 (349-425)||(44600083-44600159)
chr7 (360-435)||(18864008-18864083)
chr7 (360-435)||(20419262-20419337)
chr7 (360-435)||(22740197-22740272)
chr7 (349-432)||(36527739-36527822)
chr7 (349-435)||(20418918-20419004)
chr7 (349-435)||(37889197-37889283)
chr7 (349-435)||(37971990-37972076)
chr7 (349-435)||(37972334-37972420)
chr7 (364-425)||(13863905-13863966)
chr7 (349-425)||(13863343-13863419)
chr7 (360-435)||(3205031-3205106)
chr7 (360-435)||(13744171-13744246)
chr7 (360-435)||(17157008-17157083)
chr7 (349-435)||(3204697-3204783)
chr7 (351-425)||(8643714-8643788)
chr7 (349-435)||(18864340-18864426)
chr7 (351-421)||(46816263-46816333)
chr7 (370-435)||(9034919-9034984)
chr7 (349-433)||(9035232-9035317)
chr7 (370-435)||(42418966-42419031)
chr7 (360-435)||(42418632-42418707)
chr7 (351-425)||(13741589-13741663)
[»] scaffold0328 (2 HSPs)
scaffold0328 (349-425)||(6743-6819)
scaffold0328 (360-425)||(6193-6258)
[»] chr6 (8 HSPs)
chr6 (349-425)||(33829020-33829096)
chr6 (349-425)||(33829584-33829660)
chr6 (349-432)||(10087799-10087882)
chr6 (349-432)||(33974240-33974323)
chr6 (349-435)||(13176649-13176735)
chr6 (360-435)||(7654486-7654561)
chr6 (349-427)||(32733587-32733665)
chr6 (349-427)||(32733942-32734020)
[»] scaffold0017 (2 HSPs)
scaffold0017 (349-435)||(185212-185298)
scaffold0017 (362-435)||(184882-184955)
[»] scaffold0029 (1 HSPs)
scaffold0029 (370-435)||(9957-10022)
[»] scaffold0069 (1 HSPs)
scaffold0069 (362-434)||(50116-50187)
[»] scaffold0460 (1 HSPs)
scaffold0460 (360-435)||(371-446)
[»] scaffold0041 (1 HSPs)
scaffold0041 (349-427)||(38641-38719)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 498 - 846
Target Start/End: Original strand, 8314231 - 8314592
Alignment:
Q  498 tttttggatttaaagagaaaggagtcacgtgactccctttcattaacaaactaatcaaacattactaaaacataggcaacaatgtatccacaatcattag 597  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  8314231 tttttggatttaaagagaaaggagtcacgtgactcccattctttaacaaactaatcaaacattactaaaacataggaaacaatgtatccacaatcatta- 8314329  T
Q  598 aattttaacattatcttgttcaaaaagaacttcaacattacattacaacttcaacactgtcacaactcaaaacgaacttcaacatt-------------- 683  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||                  
T  8314330 aattttaacattatcttgatcaaaaagaacttcaacattacattacaacttcaacattgtcacaaatcaaaaagaacttcaacattacattacatcttaa 8314429  T
Q  684 acattacatcagaccttcaacattaaaatcacaaccaaaaggaacattacaatcaatcctaaacatacaactcctctaacaatttttctgttcatttttt 783  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8314430 acattacatcagaccttcaacattaaaatcacaaccacaaggaacattacaatcaatcctaaacatacaactcctttaacaatttttctgttcatttttt 8314529  T
Q  784 ctggtgaatcatttttcctcaacaaagcatttataagtctctcctctctttcagaacaagctt 846  Q
    |  ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  8314530 ccagtgaatcatttttcctcaacaaagcatttataagtttcttctctctttcagaacaagctt 8314592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 360 - 440
Target Start/End: Original strand, 8314054 - 8314134
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccctgcgt 440  Q
    |||||||| |||| || |||||||||||||| ||||||||||| || ||||||||||||||||||||| || |||||||||    
T  8314054 cgattttgcacccaatgtttttaaacgtgcgattttgcaccctatcattttccccctttctgattttatggccccctgcgt 8314134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 421
Target Start/End: Complemental strand, 1928458 - 1928386
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctg 421  Q
    |||||||| | |||||||| |||||||||||||||||| | | ||||||||||| ||||||||||| ||||||    
T  1928458 tgccaattgtgcgattttgcaccccatatttttaaacgagtggttttgcaccctatccttttccccttttctg 1928386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 42673309 - 42673234
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  42673309 cgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 42673234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 10348823 - 10348737
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||||||||||||| |||||| |||||||    
T  10348823 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctaattttatggtcccc 10348737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 26007643 - 26007557
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||||| ||  |||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  26007643 tgccaattgtacgattttgcacttcataattttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 26007557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 27238495 - 27238581
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||| ||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  27238495 tgccaattgtgcgattttgcaccctatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 27238581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 427
Target Start/End: Complemental strand, 27238924 - 27238846
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||||||||||||||||||||    
T  27238924 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgctccctatagttttccccctttctgatttta 27238846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 40848550 - 40848636
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||  |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  40848550 tgccaattgtgcgattttacaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 40848636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 48159927 - 48160005
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||||||||||||||||||||    
T  48159927 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgatttta 48160005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 538
Target Start/End: Complemental strand, 8314947 - 8314907
Alignment:
Q  498 tttttggatttaaagagaaaggagtcacgtgactccctttc 538  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  8314947 tttttggatttaaagagaaaggagtcacgcgactccctttc 8314907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 22429609 - 22429534
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||| |||||||||||||||| |||||||    
T  22429609 cgattttgcaccccatagttttaaacgagcgattttgccccctatagtttttcccctttctgattttatggtcccc 22429534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 53687929 - 53688004
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||| | |||| |  ||||||||||||||||||||| |||||||    
T  53687929 cgattttgcaccccatagttttaaacgagcgattttaccccctatagttttccccctttctgattttatggtcccc 53688004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 8315098 - 8315044
Alignment:
Q  386 gtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccctgcgt 440  Q
    ||||| ||||||||||| ||||||| ||||||||| |||||| ||||||||||||    
T  8315098 gtgcgattttgcaccctatcctttttcccctttcttattttatggtcccctgcgt 8315044  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 24485051 - 24485137
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| ||| || |||| |  |||| |||||||||||||||| |||||||    
T  24485051 tgccaattgtgcgattttgcaccccatagttttaaacgagcgatttcgccccctatagtttttcccctttctgattttatggtcccc 24485137  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 40848985 - 40848899
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||  ||| |||||| |||| |  ||||| ||||||||||||||| |||||||    
T  40848985 tgccaattgtgcgattttgcaccccatagttttaaacaagcgattttgccccctatagttttcaccctttctgattttatggtcccc 40848899  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 427
Target Start/End: Complemental strand, 48160357 - 48160279
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||| ||||||||||||||||    
T  48160357 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagtttttcccctttctgatttta 48160279  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 435
Target Start/End: Complemental strand, 42456217 - 42456134
Alignment:
Q  351 ccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||| ||||||||||||||||| |||||||    
T  42456217 ccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttt-ccccctttctgattttatggtcccc 42456134  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 36180595 - 36180670
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||| ||||||||| ||| |||||  |||| |  ||||||||||||||||||||| |||||||    
T  36180595 cgattttgcatcccatagttttaaacgagcgattttgacccctatagttttccccctttctgattttatggtcccc 36180670  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 3353575 - 3353490
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| ||| |||| ||||||||| ||| |||||| |||| |  ||| ||||||||||||||||| |||||||    
T  3353575 tgccaattgtgcgattttgcacctcatagttttaaacgagcgattttgccccctatagttt-ccccctttctgattttatggtcccc 3353490  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 22429188 - 22429274
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | ||| |||| |||| ||| ||||||||| ||| |||||  |||| |  ||||||||||||||||||||| |||||||    
T  22429188 tgccaattgtgcgactttgcacccaatagttttaaacgagcgattttgtcccctatagttttccccctttctgattttatggtcccc 22429274  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 24485484 - 24485398
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||| | ||| |||||| |||| |  | |||||||||||| |||||| |||||||    
T  24485484 tgccaattgtgcgattttgcaccccatagttttaaatgagcgattttgccccctatagtattccccctttctaattttatggtcccc 24485398  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 42673007 - 42673085
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| |||||||| |||||||||  || |||||| |||| |  |||||||||||| ||||||||    
T  42673007 tgccaattgtgcgattttgcaccccatagttttaaacgatcgattttgccccctatagttttccccctttatgatttta 42673085  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 427
Target Start/End: Complemental strand, 53688327 - 53688249
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| || ||||| ||| ||||| ||| |||||| |||| |  |||||||||||||||||||||    
T  53688327 tgccaattgtgcgattttgcactccatagtttaaaacgagcgattttgccccctatagttttccccctttctgatttta 53688249  T

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Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 4850900 - 4851199
Alignment:
Q  17 caaccactcaagaatttttagatattnnnnnnn-gttgaaagtgcttaatgaaaaatggtccttgcgttcatagagtttcaagtatgtcaaggatgtgag 115  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4850900 caaccactcaagaatttttagatattaaaaaaaagttgaaagtgcttaatgaaaaatggtccttgcgttcatatagtttcaagtatgtcaaggatgtgag 4850999  T
Q  116 attgctagtgattagccaatggtgcttaatgaaaatgtcaatcaacaaaccaattgctgcacaaatcgagctggcgtaactcttcatagaatatgttgct 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4851000 attgctagtgattagccaatggtgcttaatgaaaatgtcaatcaacaaaccaattgctgcacaaatcgagctggcgtaactcttcatagaatatgttgtt 4851099  T
Q  216 gaggggtaagttcattatatgtgaccagaataaatgttagagcatttaactctgttccaagaacaaaaattgcattaacatcaatgtcacaaaataaaaa 315  Q
    ||||| || || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4851100 gagggataggtccattatatgtgaccagaagaaatgttagagcatttaactctgttccaagaacaaaaattacattaacatcaatgtcacaaaataaaaa 4851199  T

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Target: chr4; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 137 - 315
Target Start/End: Original strand, 4848073 - 4848251
Alignment:
Q  137 gtgcttaatgaaaatgtcaatcaacaaaccaattgctgcacaaatcgagctggcgtaactcttcatagaatatgttgctgaggggtaagttcattatatg 236  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||| || || |||||||||    
T  4848073 gtgcttaatgaatatgtcaatcaacaaaccaattgctgcacaaatcgagctggcataactcttcatagaatatattgttgagggataggtccattatatg 4848172  T
Q  237 tgaccagaataaatgttagagcatttaactctgttccaagaacaaaaattgcattaacatcaatgtcacaaaataaaaa 315  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4848173 tgaccagaagaaatgttagagcatttaactcagttccaagaacaaaaattgcattaacatcaatgtcacaaaataaaaa 4848251  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 50679448 - 50679372
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| |||||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  50679448 tgccaattgtacgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 50679372  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 4239390 - 4239304
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  4239390 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatatttttccccctttctgattttatggtcccc 4239304  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 28196376 - 28196462
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  28196376 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 28196462  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 28196797 - 28196711
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  28196797 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 28196711  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 50678809 - 50678885
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  50678809 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 50678885  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 169044 - 169130
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||| |||||||||||||||| |||||||    
T  169044 tgccaattgtgcgattttgcaccccataattttaaacgagcgattttgccccctatagtttttcccctttctgattttatggtcccc 169130  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 9380765 - 9380679
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| || ||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  9380765 tgccaattgtgcgattttgcactccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 9380679  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 25161908 - 25161994
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||||||||||||||||| || |||||||    
T  25161908 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattgtatggtcccc 25161994  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 32703674 - 32703588
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||||||| |||||||||||| |||||||    
T  32703674 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccttttctgattttatggtcccc 32703588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 48405991 - 48406077
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||||| | |||||| |||||||| ||||||||| ||| |||||| |||| |  |||||||||||||||| |||| |||||||    
T  48405991 tgccaattatgcaattttgcaccccatagttttaaacgagcgattttgccccctataattttccccctttctgactttatggtcccc 48406077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 433
Target Start/End: Original strand, 9380337 - 9380421
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcc 433  Q
    |||||||| | ||||||||  ||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||    
T  9380337 tgccaattgtgcgattttgccccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcc 9380421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 36095847 - 36095922
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||| | ||||| ||||||||||||||    
T  36095847 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccctat-ctttttcccctttctgattt 36095922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 36096499 - 36096423
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||| ||||||||||||||    
T  36096499 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatcttttttcccctttctgattt 36096423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 435
Target Start/End: Original strand, 39744062 - 39744146
Alignment:
Q  351 ccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||| | |||||||  |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  39744062 ccaattgtgcgattttccaccccataattttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 39744146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 169452 - 169377
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||||||||||| |||||||| |||||||    
T  169452 cgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttttgattttatggtcccc 169377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 9023693 - 9023618
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||| | ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  9023693 cgattttgcaccccatagttttaaatgagcgattttgccccctatagttttccccctttctgattttatggtcccc 9023618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 39744478 - 39744403
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||  |||||||    
T  39744478 cgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttgtggtcccc 39744403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 9023274 - 9023360
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| | | |||||| |||| |  |||||||||||| |||||||| |||||||    
T  9023274 tgccaattgtgcgattttgcaccccatagttttaaacgagtgattttgccccctatagttttccccctttatgattttatggtcccc 9023360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 361 - 435
Target Start/End: Complemental strand, 25162325 - 25162251
Alignment:
Q  361 gattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    ||||||| || ||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  25162325 gattttgcactccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 25162251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 32703255 - 32703341
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | ||||| || ||||| || ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  32703255 tgccaattgtgcgattatgcaccccgtagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 32703341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 351 - 425
Target Start/End: Original strand, 43050639 - 43050713
Alignment:
Q  351 ccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||| | |||||||| ||||||| |||||||||| | | ||||||||||  || |||||||||||||||||||    
T  43050639 ccaattgtgcgattttgcaccccatgtttttaaacgagtgattttgcaccccatctttttccccctttctgattt 43050713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 48406409 - 48406323
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||| ||| ||||||||| ||| |||||| |||| |  |||| |||||||||||||||| |||||||    
T  48406409 tgccaattgtgcgattttgcaccctatagttttaaacgagcgattttgccccctatagtttttcccctttctgattttatggtcccc 48406323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 433
Target Start/End: Original strand, 43292078 - 43292151
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcc 433  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||| |||||||||||||||| |||||    
T  43292078 cgattttgcaccccatagttttaaacgagcgattttgccccctatagtttttcccctttctgattttatggtcc 43292151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 43051264 - 43051200
Alignment:
Q  361 gattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    ||||||| ||||||| |||||||||| ||| ||||||||||  || ||||||| |||||||||||    
T  43051264 gattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccctctttctgattt 43051200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 293230 - 293163
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| |||||||| ||||||||| ||| |||||| || | |  |||||||||||||||||||||    
T  293230 cgattttgcaccccatagttttaaacgagcgattttgccccgtatagttttccccctttctgatttta 293163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 5202770 - 5202739
Alignment:
Q  88 agagtttcaagtatgtcaaggatgtgagattg 119  Q
    ||||||||||||||||||||||||||||||||    
T  5202770 agagtttcaagtatgtcaaggatgtgagattg 5202739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 5205552 - 5205497
Alignment:
Q  233 tatgtgaccagaataaatgttagagcatttaactctgttccaagaacaaaaattgc 288  Q
    ||||||||||||| ||| ||||||||| || ||||| |||||||||||| ||||||    
T  5205552 tatgtgaccagaagaaaagttagagcacttgactcttttccaagaacaacaattgc 5205497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 418
Target Start/End: Complemental strand, 11530201 - 11530154
Alignment:
Q  371 cccatatttttaaacgtgcgtttttgcaccctgtccttttcccccttt 418  Q
    ||||||||||||| |||||| ||||||||||  |||||||||||||||    
T  11530201 cccatatttttaatcgtgcgattttgcacccaatccttttcccccttt 11530154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 23540265 - 23540190
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||| ||| ||||||||| ||| |||| | |||| |  ||||||||||||||||||||| |||||||    
T  23540265 cgattttgcaccctatagttttaaacgagcgattttaccccctatagttttccccctttctgattttatggtcccc 23540190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 39086647 - 39086564
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtc 432  Q
    |||||||| | |||||||| |||  ||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| ||||    
T  39086647 tgccaattgtgcgattttgcacctaatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtc 39086564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 427
Target Start/End: Complemental strand, 44468947 - 44468869
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| ||| |||| ||||||||| ||| |||||| |||| |  |||||| ||||||||||||||    
T  44468947 tgccaattgtgcgattttgcacctcatagttttaaacgagcgattttgccccctatagttttcctcctttctgatttta 44468869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 5141157 - 5141124
Alignment:
Q  285 ttgcattaacatcaatgtcacaaaataaaaaagg 318  Q
    ||||||||||||||||||||||||||| ||||||    
T  5141157 ttgcattaacatcaatgtcacaaaatataaaagg 5141124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 434
Target Start/End: Complemental strand, 12758228 - 12758143
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtccc 434  Q
    ||||||||||  | ||||| || ||||| ||||||||| ||  |||||| |||| |  ||||||||||||||||||||| ||||||    
T  12758228 tgccaattatgtgtttttgcacgccatagttttaaacgagcaattttgccccctatagttttccccctttctgattttatggtccc 12758143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 1e-86; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 616 - 843
Target Start/End: Original strand, 39691252 - 39691493
Alignment:
Q  616 ttcaaaaagaacttcaacattacattacaacttcaacactgtcacaactcaaaacgaacttcaacattacat--------------tacatcagaccttc 701  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||              ||||||||||||||    
T  39691252 ttcaaaaagaacttcaacattacattacaacttcaacattgtcacaactcaaaaagaacttcaacattacattacatcttaaacattacatcagaccttc 39691351  T
Q  702 aacattaaaatcacaaccaaaaggaacattacaatcaatcctaaacatacaactcctctaacaatttttctgttcattttttctggtgaatcatttttcc 801  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  39691352 aacattaaaatcacaaccataaggaacattacaatcaatcctaaacatacaactcctctaacaatttttctgttcattttttccagtgaatcatttttcc 39691451  T
Q  802 tcaacaaagcatttataagtctctcctctctttcagaacaag 843  Q
    |||||||||||||||||||| ||| |||||||| ||||||||    
T  39691452 tcaacaaagcatttataagtttcttctctctttaagaacaag 39691493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 501 - 592
Target Start/End: Original strand, 39690981 - 39691071
Alignment:
Q  501 ttggatttaaagagaaaggagtcacgtgactccctttcattaacaaactaatcaaacattactaaaacataggcaacaatgtatccacaatc 592  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39690981 ttggatttaaagagaaaggagtcacgtgactccctttctttaacaaactaatcaaacatt-ctaaaacataggcaacaatgtatccacaatc 39691071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 578 - 693
Target Start/End: Original strand, 39691088 - 39691210
Alignment:
Q  578 aatgtatccacaatcattagaattttaacattatcttg--------ttcaaaaagaacttcaacattacattacaacttcaacactgtcacaactcaaaa 669  Q
    ||||||||||||||||||| |||||||||||||||||         |||||||||||||||||||| ||||||||||||||||| || ||||||||||||    
T  39691088 aatgtatccacaatcatta-aattttaacattatcttactcaatccttcaaaaagaacttcaacatcacattacaacttcaacattggcacaactcaaaa 39691186  T
Q  670 cgaacttcaacattacattacatc 693  Q
     |||||||||||||||||||||||    
T  39691187 agaacttcaacattacattacatc 39691210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 360 - 440
Target Start/End: Complemental strand, 39692013 - 39691933
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccctgcgt 440  Q
    |||||||| ||||||| |||||||||||| | ||||||||||| || ||||||||||||||||||||| ||||||||||||    
T  39692013 cgattttgcaccccatgtttttaaacgtgtgattttgcaccctatctttttccccctttctgattttatggtcccctgcgt 39691933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 28633750 - 28633828
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| |||||||||| |||||||| ||||||||| ||| |||||| |||| |  |||||||||||||||||||||    
T  28633750 tgccaattgtacgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgatttta 28633828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 48105140 - 48105054
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  48105140 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 48105054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 433
Target Start/End: Original strand, 9347156 - 9347240
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcc 433  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||    
T  9347156 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcc 9347240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 49284439 - 49284515
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  49284439 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 49284515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 433
Target Start/End: Complemental strand, 50526496 - 50526412
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcc 433  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||    
T  50526496 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcc 50526412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 349 - 432
Target Start/End: Original strand, 13918476 - 13918559
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtc 432  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| ||||    
T  13918476 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtc 13918559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 20480208 - 20480283
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  20480208 cgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 20480283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 26814735 - 26814810
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  26814735 cgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 26814810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 26815132 - 26815057
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  26815132 cgattttgcaccccatagttttaaacgagcgattttgccccctataattttccccctttctgattttatggtcccc 26815057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 48104719 - 48104794
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  48104719 cgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 48104794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 999549 - 999463
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| | |||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  999549 tgccaattgtgcgattttgcaacccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 999463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 21687491 - 21687405
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||||||| |||| ||||||||| ||| |||| | | ||||  ||||||||||||||||||||| |||||||    
T  21687491 tgccaattgtgcgattttgtacctcatagttttaaacgagcgatttttccctctgtagttttccccctttctgattttatggtcccc 21687405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 27172145 - 27172223
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||||||||||||||||||||    
T  27172145 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgatttta 27172223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 32163067 - 32162981
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| || | |  ||||||||||||||||||||| |||||||    
T  32163067 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccttatagttttccccctttctgattttatggtcccc 32162981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 50430105 - 50430019
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||| ||||||||||||||| |||||||    
T  50430105 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttctccctttctgattttatggtcccc 50430019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 361 - 425
Target Start/End: Original strand, 6002279 - 6002343
Alignment:
Q  361 gattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    ||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  6002279 gattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 6002343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 538
Target Start/End: Complemental strand, 39691857 - 39691817
Alignment:
Q  498 tttttggatttaaagagaaaggagtcacgtgactccctttc 538  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  39691857 tttttggattcaaagagaaaggagtcacgtgactccctttc 39691817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 49285079 - 49285003
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||  ||| ||||||||||  || |||||||||||||||||||    
T  49285079 tgccaattgtgcgattttgcaccccatgtttttaaacaagcgattttgcaccccatctttttccccctttctgattt 49285003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 28634170 - 28634095
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| |||||||||  || |||||| |||| |  ||||||||||||||||||||| |||||||    
T  28634170 cgattttgcaccccatagttttaaacgatcgattttgccccctatagttttccccctttctgattttatggtcccc 28634095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 50615634 - 50615559
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||| | ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  50615634 cgattttgcaccccatagttttaaatgagcgattttgccccctatagttttccccctttctgattttatggtcccc 50615559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 50623462 - 50623387
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||| | ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  50623462 cgattttgcaccccatagttttaaatgagcgattttgccccctatagttttccccctttctgattttatggtcccc 50623387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 427
Target Start/End: Complemental strand, 9347575 - 9347497
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | | |||||| |||||||| ||||||||| ||| |||||| |||| |  |||||||||||||||||||||    
T  9347575 tgccaattgtgcaattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgatttta 9347497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 39690832 - 39690886
Alignment:
Q  386 gtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccctgcgt 440  Q
    ||||| ||||||||||| |||||||| ||||||||||||||| | ||||||||||    
T  39690832 gtgcgattttgcaccctatccttttctccctttctgattttatgatcccctgcgt 39690886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 46823873 - 46823951
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| || ||||| ||||||||| ||| |||||| |||| |  |||||||||||||||||||||    
T  46823873 tgccaattgtgcgattttgcactccatagttttaaacgagcgattttgccccctatagttttccccctttctgatttta 46823951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 46824302 - 46824216
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | | |||||| |||||||| ||||||||| ||| |||||| |||| |  |||||||||||| |||||||| |||||||    
T  46824302 tgccaattgtgcaattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttttgattttatggtcccc 46824216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 6002907 - 6002842
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| ||||||| |||||||||| ||| |||||||||   || |||||||||||||||||||    
T  6002907 cgattttgcaccccatgtttttaaacgagcgattttgcacctcatctttttccccctttctgattt 6002842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 362 - 435
Target Start/End: Original strand, 21687068 - 21687141
Alignment:
Q  362 attttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||| |||||||| ||||||||| ||| |||||| |||| |  |||||| |||||||||||||| |||||||    
T  21687068 attttgcaccccatagttttaaacgagcgattttgccccctatagttttcctcctttctgattttatggtcccc 21687141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 435
Target Start/End: Original strand, 6703492 - 6703576
Alignment:
Q  351 ccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||| | |||||||| ||| |||| ||||||||| ||| |||||| |||| |  |||||||| |||||||||||| |||||||    
T  6703492 ccaattgtgcgattttgcacctcatagttttaaacgagcgattttgccccctatagttttccccttttctgattttatggtcccc 6703576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 362 - 434
Target Start/End: Original strand, 20371081 - 20371152
Alignment:
Q  362 attttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtccc 434  Q
    |||||| |||||||| ||||||||| ||| |||||| ||||||  |||||||| |||||||||||| ||||||    
T  20371081 attttgcaccccatagttttaaacgagcgattttgccccctgtagttttcccc-tttctgattttatggtccc 20371152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 27172565 - 27172480
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| | |||||  ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  27172565 tgccaattgtgcgattttgcatcccattgttttaaacgagcgattttgc-ccctatagttttccccctttctgattttatggtcccc 27172480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 42611215 - 42611293
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| ||| |||| ||||||||| ||| ||||||  ||| |  |||||||||||||||||||||    
T  42611215 tgccaattgtgcgattttgcacctcatagttttaaacgagcgattttgcctcctatagttttccccctttctgatttta 42611293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 44911055 - 44911133
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| |||||||  ||| ||||| ||| |||||| |||| |  |||||||||||||||||||||    
T  44911055 tgccaattgtgcgattttgcaccccattgtttaaaacgagcgattttgccccctatagttttccccctttctgatttta 44911133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 49317781 - 49317867
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | | |||||| | |||||| ||||||||| ||| |||| | |||| |  ||||||||||||||||||||| |||||||    
T  49317781 tgccaattgtgcaattttgcatcccatagttttaaacgagcgattttaccccctatagttttccccctttctgattttatggtcccc 49317867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 427
Target Start/End: Complemental strand, 49318190 - 49318112
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| | |||||| ||| ||||| ||| |||||| |||| |  |||||||||||||||||||||    
T  49318190 tgccaattgtgcgattttgcatcccatagtttaaaacgagcgattttgccccctatagttttccccctttctgatttta 49318112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 19008763 - 19008698
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| |||||||| ||| ||||||||  |||||| |||| |  |||||||||||||||||||    
T  19008763 cgattttgcaccccatagtttaaaacgtgcaattttgccccctataattttccccctttctgattt 19008698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 9e-60; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 578 - 785
Target Start/End: Original strand, 15443083 - 15443311
Alignment:
Q  578 aatgtatccacaatcattagaattttaacattatcttg--------ttcaaaaagaacttcaacattacattacaacttcaacactgtcacaactcaaaa 669  Q
    ||||||||||| ||||||| | ||||||||||||||||        |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15443083 aatgtatccacgatcatta-acttttaacattatcttgctcaatccttcaaaaagaacttcaacattacattacaacttcaacattgtcacaactcaaaa 15443181  T
Q  670 cgaacttcaacattacattacatc--------------agaccttcaacattaaaatcacaaccaaaaggaacattacaatcaatcctaaacatacaact 755  Q
     |||||||||||||||||| ||||              |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  15443182 agaacttcaacattacattgcatcttaaacattacatgagaccttcaacattgaaatcacaaccacaaggaacattacaatcaatcctaaacatacaact 15443281  T
Q  756 cctctaacaatttttctgttcattttttct 785  Q
    ||||||||||||||||||||||||||||||    
T  15443282 cctctaacaatttttctgttcattttttct 15443311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 501 - 595
Target Start/End: Original strand, 15442974 - 15443067
Alignment:
Q  501 ttggatttaaagagaaaggagtcacgtgactccctttcattaacaaactaatcaaacattactaaaacataggcaacaatgtatccacaatcatt 595  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  15442974 ttggatttaaagagaaaggagtcacgtgactccctttctttaacaaactaatcaaacattact-aaacataggcaacaatatatccacaatcatt 15443067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 15442805 - 15442884
Alignment:
Q  361 gattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccctgcgt 440  Q
    ||||||| ||||||| |||||||||||||| ||||||||||| |||||||||| |||| |||||||| ||||||||||||    
T  15442805 gattttgcaccccatgtttttaaacgtgcgattttgcaccctatccttttcccgctttgtgattttatggtcccctgcgt 15442884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 9823385 - 9823309
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  9823385 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 9823309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 13027305 - 13027229
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  13027305 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 13027229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 39724072 - 39723996
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  39724072 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 39723996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 37396749 - 37396824
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  37396749 cgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 37396824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 20861662 - 20861576
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| ||||||  ||| |  ||||||||||||||||||||| |||||||    
T  20861662 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgcctcctataattttccccctttctgattttatggtcccc 20861576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 24473792 - 24473706
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||  |||| |  ||||||||||||||||||||| |||||||    
T  24473792 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgtcccctatagttttccccctttctgattttatggtcccc 24473706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 360 - 425
Target Start/End: Original strand, 9822789 - 9822854
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| ||||||| |||||||||| ||| ||||||||| | || |||||||||||||||||||    
T  9822789 cgattttgcaccccatgtttttaaacgagcgattttgcaccatatctttttccccctttctgattt 9822854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 13026665 - 13026741
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||| ||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  13026665 tgccaattgtgcgattttgcacctcatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 13026741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 538
Target Start/End: Complemental strand, 15443659 - 15443619
Alignment:
Q  498 tttttggatttaaagagaaaggagtcacgtgactccctttc 538  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  15443659 tttttggattcaaagagaaaggagtcacgtgactccctttc 15443619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 39723432 - 39723508
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| | ||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  39723432 tgccaattgtgcgattttgcatcccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 39723508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 34498163 - 34498237
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| ||||||||||| |   |||||||||||||||||||| |||||||    
T  34498163 cgattttgcaccccatagttttaaacgagcgattttgcaccctat-agtttccccctttctgattttatggtcccc 34498237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 427
Target Start/End: Complemental strand, 6199120 - 6199042
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| | |||||| ||||||||| ||| |||||| |||| |  |||||||||||||||||||||    
T  6199120 tgccaattgtgcgattttgcatcccatagttttaaacgagcgattttgccccctatagttttccccctttctgatttta 6199042  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 351 - 425
Target Start/End: Original strand, 13936754 - 13936827
Alignment:
Q  351 ccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||| | |||||||| |||||||||||||||||| ||| ||||||||||  | ||||| ||||||||||||||    
T  13936754 ccaattgtgcgattttgcaccccatatttttaaacgagcgattttgcaccccat-ctttttcccctttctgattt 13936827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 425
Target Start/End: Original strand, 22851431 - 22851496
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| ||||||| |||||||||  ||| ||||||||||  || |||||||||||||||||||    
T  22851431 cgattttgcaccccatgtttttaaacaagcgattttgcaccccatctttttccccctttctgattt 22851496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 435
Target Start/End: Original strand, 6198690 - 6198774
Alignment:
Q  351 ccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||| | |||||||| |||| ||| ||||||||| ||| |||||| |||| |  |||||||| |||||||||||| |||||||    
T  6198690 ccaattgtgcgattttgcaccctatagttttaaacgagcgattttgccccctatagttttccccatttctgattttatggtcccc 6198774  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 436
Target Start/End: Original strand, 9623532 - 9623619
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccct 436  Q
    |||||||| | |||||||| |||||||| ||||||||| ||  |||||| |||| |  |||||||  |||||||||||| ||||||||    
T  9623532 tgccaattgtgcgattttgcaccccatagttttaaacgagcaattttgccccctatagttttccctttttctgattttatggtcccct 9623619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 17431328 - 17431403
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||  ||| |||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  17431328 cgatttttcacctcatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 17431403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 33727118 - 33727043
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| ||  |||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  33727118 cgattttgcacttcatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 33727043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 435
Target Start/End: Original strand, 24473385 - 24473459
Alignment:
Q  361 gattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    ||||||| |||||||| ||||||| | ||| |||||| |||| |  ||| ||||||||||||||||| |||||||    
T  24473385 gattttgcaccccataattttaaatgagcgattttgccccctatagtttcccccctttctgattttatggtcccc 24473459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 37397169 - 37397083
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | ||||||||  ||||||| ||||||||| |||  ||||| |||| |   |||||||||||||||||||| |||||||    
T  37397169 tgccaattgtgcgattttgccccccatagttttaaacgagcgactttgccccctatagatttccccctttctgattttatggtcccc 37397083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 360 - 425
Target Start/End: Original strand, 3307379 - 3307444
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||||||||||  ||| ||||||||||  || ||||| |||||||||||||    
T  3307379 cgattttgcatcccatatttttaaacaagcgattttgcaccccatctttttctccctttctgattt 3307444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 3888686 - 3888600
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  3888686 tgccaattgtacgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 3888600  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 349 - 434
Target Start/End: Original strand, 3888269 - 3888354
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtccc 434  Q
    |||||||| |||||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| ||||||    
T  3888269 tgccaattgtacgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtccc 3888354  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 19514556 - 19514642
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  19514556 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 19514642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 349 - 434
Target Start/End: Complemental strand, 22729464 - 22729379
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtccc 434  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| ||||||    
T  22729464 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtccc 22729379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 18817635 - 18817559
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  18817635 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 18817559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 12498597 - 12498675
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||||||||||||||||||||    
T  12498597 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgatttta 12498675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 12498952 - 12498866
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||  ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  12498952 tgccaattgtgcgattttgcaccccatagttttaaacaagcgattttgccccctatagttttccccctttctgattttatggtcccc 12498866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 21207256 - 21207342
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||| ||||||||||||||| |||||||    
T  21207256 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttcaccctttctgattttatggtcccc 21207342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 26571188 - 26571102
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||||| |||||||||||||| |||||||    
T  26571188 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttcctcctttctgattttatggtcccc 26571102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 351 - 440
Target Start/End: Original strand, 42919336 - 42919425
Alignment:
Q  351 ccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccctgcgt 440  Q
    |||||| | |||||||  ||| ||| |||||||||| ||| ||||||||||| || |||| |||||||||||||||| ||| ||||||||    
T  42919336 ccaattgtgcgatttttcaccacatgtttttaaacgagcgattttgcaccctatcatttttcccctttctgattttatggttccctgcgt 42919425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 18816982 - 18817058
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||| ||  || |||||||||||||||||||    
T  18816982 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcatcccatctttttccccctttctgattt 18817058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 538
Target Start/End: Original strand, 42919517 - 42919557
Alignment:
Q  498 tttttggatttaaagagaaaggagtcacgtgactccctttc 538  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  42919517 tttttggaattaaagagaaaggagtcacgtgactccctttc 42919557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 362 - 425
Target Start/End: Original strand, 11350850 - 11350913
Alignment:
Q  362 attttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||| |||||||||||||||||| ||| ||||||||||  || |||||||||||| ||||||    
T  11350850 attttgcaccccatatttttaaacgagcgattttgcaccccatctttttccccctttttgattt 11350913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 26570770 - 26570845
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||  |||| |  ||||||||||||||||||||| |||||||    
T  26570770 cgattttgcaccccatagttttaaacgagcgattttgtcccctatagttttccccctttctgattttatggtcccc 26570845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 34147180 - 34147255
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| ||||| || ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  34147180 cgattttgcaccccgtagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 34147255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 352 - 435
Target Start/End: Complemental strand, 41072235 - 41072152
Alignment:
Q  352 caattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    ||||| |||||||||| |||| ||| ||||||||| ||| |||||| |||| |  |||||||||||||| |||||| |||||||    
T  41072235 caattgtacgattttgcaccctatagttttaaacgagcgattttgccccctatagttttccccctttctaattttatggtcccc 41072152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 43464205 - 43464130
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| ||| |||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  43464205 cgattttgcacctcatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 43464130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 43463785 - 43463863
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||| |||||||||||||||    
T  43463785 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttctccctttctgatttta 43463863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 11351451 - 11351376
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| |||||||||||||||||| ||| |||| |||||  | ||||||||||||| ||||||    
T  11351451 tgccaattgtgcgattttgcaccccatatttttaaacgagcgattttacaccccat-cttttccccctttatgattt 11351376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 25940562 - 25940637
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||| ||| ||||||||| ||| |||||| |||| |  ||||| ||||||||||||||| |||||||    
T  25940562 cgattttgcaccctatagttttaaacgagcgattttgccccctatagttttcaccctttctgattttatggtcccc 25940637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 34147523 - 34147448
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| ||| | || ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  34147523 cgattttgcacctcgtagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 34147448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 2817179 - 2817264
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| | |||||| ||||||||| ||| |||||| |||| |  |||||||| |||||||||||| |||||||    
T  2817179 tgccaattgtgcgattttgcatcccataattttaaacgagcgattttgccccctatatttttcccc-tttctgattttatggtcccc 2817264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 11316998 - 11316912
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||  ||||||| | ||| |||||| |||| |  ||||||| ||||||||||||| |||||||    
T  11316998 tgccaattgtgcgattttgcaccccattgttttaaatgagcgattttgccccctatagttttccctctttctgattttatggtcccc 11316912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 2638850 - 2638926
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| |||||||||||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  2638850 tgccaattgtgcgattttgcaccccatatttttaaacgagcgattttgcaccccatctttttccccctttctgattt 2638926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 8851178 - 8851264
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  8851178 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 8851264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 26692844 - 26692758
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  26692844 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 26692758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 2639506 - 2639430
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  2639506 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 2639430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 7591231 - 7591307
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  7591231 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 7591307  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 26841617 - 26841693
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  26841617 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 26841693  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 26842262 - 26842186
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  26842262 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 26842186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 7664289 - 7664364
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  7664289 cgattttgcaccccatagttttaaacgagcgattttgccccctataattttccccctttctgattttatggtcccc 7664364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 7664686 - 7664611
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  7664686 cgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 7664611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 700 - 765
Target Start/End: Original strand, 5379201 - 5379266
Alignment:
Q  700 tcaacattaaaatcacaaccaaaaggaacattacaatcaatcctaaacatacaactcctctaacaa 765  Q
    ||||||||| |||||||| |||  |||||||||||||||| ||||||||||||| |||| ||||||    
T  5379201 tcaacattacaatcacaatcaactggaacattacaatcaaacctaaacatacaattcctataacaa 5379266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 349 - 434
Target Start/End: Complemental strand, 17851426 - 17851341
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtccc 434  Q
    |||||||| | |||||||  |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| ||||||    
T  17851426 tgccaattgtgcgattttacaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtccc 17851341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 16911293 - 16911210
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtc 432  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||  |||| |  ||||||||||||||||||||| ||||    
T  16911293 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgtcccctatagttttccccctttctgattttatggtc 16911210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 26692437 - 26692512
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||| |||||||||||||||| |||||||    
T  26692437 cgattttgcaccccatagttttaaacgagcgattttgctccctataatttttcccctttctgattttatggtcccc 26692512  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 16910857 - 16910943
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| | || |  |||||| |||||||||||||| |||||||    
T  16910857 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccctctatagttttcctcctttctgattttatggtcccc 16910943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 427
Target Start/End: Original strand, 7979606 - 7979673
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||| |||||||||||||    
T  7979606 cgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccctctttctgatttta 7979673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 8851595 - 8851521
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||||||| |||||||||||| |||||||    
T  8851595 cgattttgcaccccatagttttaaacgagcgattttgccccctatagttttcccc-tttctgattttatggtcccc 8851521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 5793477 - 5793563
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| | || ||| ||||||||| ||| |||||| |||| |  ||||||| ||||||||||||| |||||||    
T  5793477 tgccaattgtgcgattttgcatcctatagttttaaacgagcgattttgccccctatagttttccctctttctgattttatggtcccc 5793563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 427
Target Start/End: Complemental strand, 19141873 - 19141795
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| | |||||| ||| ||||| ||| |||||| |||| |  |||||||||||||||||||||    
T  19141873 tgccaattgtgcgattttgcatcccatagtttaaaacgagcgattttgccccctatagttttccccctttctgatttta 19141795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 7591863 - 7591798
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| ||||||| |||||||||| ||| |||||||||   |  |||||||||||||||||||    
T  7591863 cgattttgcaccccatgtttttaaacgagcgattttgcacctcatttttttccccctttctgattt 7591798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 10533064 - 10533150
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  10533064 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 10533150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 37888863 - 37888949
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  37888863 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 37888949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 44599519 - 44599595
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  44599519 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 44599595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 44600159 - 44600083
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  44600159 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 44600083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 18864008 - 18864083
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  18864008 cgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 18864083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 20419337 - 20419262
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  20419337 cgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 20419262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 22740197 - 22740272
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  22740197 cgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 22740272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 36527822 - 36527739
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtc 432  Q
    |||||||||| |||||||| | |||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| ||||    
T  36527822 tgccaattatgcgattttgcatcccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtc 36527739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 20418918 - 20419004
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||| ||||||||||||||| |||||||    
T  20418918 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttcaccctttctgattttatggtcccc 20419004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 37889283 - 37889197
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||| ||||||||||||||| |||||||    
T  37889283 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttctccctttctgattttatggtcccc 37889197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 37971990 - 37972076
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||| |||||||||||||||| |||||||    
T  37971990 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagtttttcccctttctgattttatggtcccc 37972076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 37972420 - 37972334
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||| ||||||| |||||||    
T  37972420 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttcagattttatggtcccc 37972334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 364 - 425
Target Start/End: Complemental strand, 13863966 - 13863905
Alignment:
Q  364 tttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||| |||||||||||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  13863966 tttgcaccccatatttttaaacgagcgattttgcaccccatctttttccccctttctgattt 13863905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 13863343 - 13863419
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || ||||||| |||||||||||    
T  13863343 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccctctttctgattt 13863419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 3205106 - 3205031
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| ||||| || ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  3205106 cgattttgcaccccgtagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 3205031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 13744246 - 13744171
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| ||| |||||| |||| |  |||||||||||| |||||||| |||||||    
T  13744246 cgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttttgattttatggtcccc 13744171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 17157008 - 17157083
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||| | ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  17157008 cgattttgcaccccatagttttaaatgagcgattttgccccctatagttttccccctttctgattttatggtcccc 17157083  T

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Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 3204697 - 3204783
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||  |||||| |||| |  ||||||| ||||||||||||| |||||||    
T  3204697 tgccaattgtgcgattttgcaccccatagttttaaacgagcaattttgccccctatagttttccctctttctgattttatggtcccc 3204783  T

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Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 351 - 425
Target Start/End: Complemental strand, 8643788 - 8643714
Alignment:
Q  351 ccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||| | |||||||| ||||||| || ||||||| ||| ||||||||||  || |||||||||||||||||||    
T  8643788 ccaattgtgcgattttgcaccccatgttattaaacgagcgattttgcaccccatctttttccccctttctgattt 8643714  T

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Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 18864426 - 18864340
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| ||| |||| ||||||| | ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  18864426 tgccaattgtgcgattttgcacctcatagttttaaaagagcgattttgccccctatagttttccccctttctgattttatggtcccc 18864340  T

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Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 351 - 421
Target Start/End: Complemental strand, 46816333 - 46816263
Alignment:
Q  351 ccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctg 421  Q
    |||||||| |||||||| |||||||||||||||||| ||| ||||| ||||  || |||| ||||||||||    
T  46816333 ccaattatgcgattttgcaccccatatttttaaacgagcgattttgtaccccatcatttttcccctttctg 46816263  T

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Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 435
Target Start/End: Original strand, 9034919 - 9034984
Alignment:
Q  370 ccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    ||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  9034919 ccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 9034984  T

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Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 433
Target Start/End: Complemental strand, 9035317 - 9035232
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttc-cccctttctgattttacggtcc 433  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||| |||||||||||||||| |||||    
T  9035317 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttctcccctttctgattttatggtcc 9035232  T

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Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 435
Target Start/End: Complemental strand, 42419031 - 42418966
Alignment:
Q  370 ccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    ||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  42419031 ccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 42418966  T

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Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 42418632 - 42418707
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||||| || ||| ||||||||| ||| |||||| |||| |  |||||||||||||| |||||| |||||||    
T  42418632 cgattttgtatcctatagttttaaacgagcgattttgccccctatagttttccccctttctaattttatggtcccc 42418707  T

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Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 351 - 425
Target Start/End: Original strand, 13741589 - 13741663
Alignment:
Q  351 ccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||| |||||||||||    
T  13741589 ccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttcccactttctgattt 13741663  T

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Target: scaffold0328 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 6819 - 6743
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  6819 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 6743  T

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Target: scaffold0328; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 425
Target Start/End: Original strand, 6193 - 6258
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||  |||||||||||||||| | ||| ||||||||||  || |||||||||||||||||||    
T  6193 cgattttacaccccatatttttaaatgagcgattttgcaccccatctttttccccctttctgattt 6258  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 33829020 - 33829096
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  33829020 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 33829096  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 33829660 - 33829584
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattt 425  Q
    |||||||| | |||||||| ||||||| |||||||||| ||| ||||||||||  || |||||||||||||||||||    
T  33829660 tgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccctttctgattt 33829584  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 10087882 - 10087799
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtc 432  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| ||||    
T  10087882 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtc 10087799  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 33974323 - 33974240
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtc 432  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| ||||    
T  33974323 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtc 33974240  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 13176649 - 13176735
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||||||| |||||  ||||||| | ||| |||||| |||| |  ||||||| ||||||||||||| |||||||    
T  13176649 tgccaattgtacgattttgtatcccatgattttaaatgagcgattttgccccctatagttttcccactttctgattttatggtcccc 13176735  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 7654561 - 7654486
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| |||||||| ||||||||| | |  ||||| |||| |  ||||||||||||||||||||| |||||||    
T  7654561 cgattttgcaccccatagttttaaacgagtgactttgccccctatagttttccccctttctgattttatggtcccc 7654486  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 32733587 - 32733665
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    ||||||||||||||||||| | |||||| ||||||||| ||  ||||||  ||| |  |||| ||||||||||||||||    
T  32733587 tgccaattatacgattttgcatcccatagttttaaacgagcaattttgcctcctatagtttttcccctttctgatttta 32733665  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 427
Target Start/End: Complemental strand, 32734020 - 32733942
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| | |||||| ||||||||| ||| |||||| |||| |  ||||| |||||||||||||||    
T  32734020 tgccaattgtgcgattttgcatcccatagttttaaacgagcgattttgccccctataattttctccctttctgatttta 32733942  T

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Target: scaffold0017 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 185298 - 185212
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||||| |||||||| ||||||||| ||| |||||| |||| |  ||||||| ||||||||||||| |||||||    
T  185298 tgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctatagttttccctctttctgattttatggtcccc 185212  T

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Target: scaffold0017; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 362 - 435
Target Start/End: Original strand, 184882 - 184955
Alignment:
Q  362 attttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||| |||||||| ||||||||| ||| ||||||  ||| |  ||||||||||||||||||||| |||||||    
T  184882 attttgcaccccatagttttaaacgagcgattttgccacctatagttttccccctttctgattttatggtcccc 184955  T

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Target: scaffold0029 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 435
Target Start/End: Original strand, 9957 - 10022
Alignment:
Q  370 ccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    ||||||| ||||||||| ||| |||||| |||| |  ||||||||||||||||||||| |||||||    
T  9957 ccccatagttttaaacgagcgattttgccccctatagttttccccctttctgattttatggtcccc 10022  T

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Target: scaffold0069 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 362 - 434
Target Start/End: Original strand, 50116 - 50187
Alignment:
Q  362 attttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtccc 434  Q
    |||||| |||||||| ||||||||| ||| |||||| ||||||  |||||||| |||||||||||| ||||||    
T  50116 attttgcaccccatagttttaaacgagcgattttgccccctgtagttttcccc-tttctgattttatggtccc 50187  T

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Target: scaffold0460 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 371 - 446
Alignment:
Q  360 cgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgattttacggtcccc 435  Q
    |||||||| | |||||| ||||||||| ||| |||||| |||| |  |||||||| |||||||||||| |||||||    
T  371 cgattttgcatcccatagttttaaacgagcgattttgccccctatagttttccccttttctgattttatggtcccc 446  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 427
Target Start/End: Complemental strand, 38719 - 38641
Alignment:
Q  349 tgccaattatacgattttgtaccccatatttttaaacgtgcgtttttgcaccctgtccttttccccctttctgatttta 427  Q
    |||||||| | |||||||| |||||||| | |||||||  || |||||| |||| |  |||||||||||||||||||||    
T  38719 tgccaattgtgcgattttgcaccccatagtcttaaacgaacgattttgccccctatagttttccccctttctgatttta 38641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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