View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254-Insertion-13 (Length: 502)
Name: NF1254-Insertion-13
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254-Insertion-13 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 8 - 502
Target Start/End: Complemental strand, 2239452 - 2238958
Alignment:
| Q |
8 |
ataggtggtgtaggtggatccgtgtatgtgtcttctatggtagtctctccgtcctcgtgaatggttgtccgactgaggaggttgatattcaaggagggtt |
107 |
Q |
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| T |
2239452 |
ataggtggtgtaggtggatccgtgtatgtgtcttctatggtagtctctccgtcctcgtgaatggttgtccgactgaggaggttgatattcaaggagggtt |
2239353 |
T |
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| Q |
108 |
gaagcaatgcgaccctcttgctctgttccttttcttgttcgtggttgaggggctgagtggtttggtccggttagccgaagctacgagcttgttccatggt |
207 |
Q |
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| T |
2239352 |
gaagcaatgcgaccctcttgctctgttccttttcttgttcgtggttgaggggctgagtggtttggtccggttagccgaagctacgagcttgttccatggt |
2239253 |
T |
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| Q |
208 |
tttaaggtgagtaactcaggcctctcgatctctcatctttaatatgccaatgatactttattcattggggaagctaccatggcgaacctccaagctttaa |
307 |
Q |
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| T |
2239252 |
tttaaggtgagtaactcaggcctctcgatctctcatctttaatatgccaatgatactttattcattggggaagctaccatggcgaacctccaagctttaa |
2239153 |
T |
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| Q |
308 |
agactatccttcgctgttttgagctctcttctggacttaaagtgaattcttctaagagtttgttcatgggggctaatgtggggcctgagttccttggaat |
407 |
Q |
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| T |
2239152 |
agactatccttcgctgttttgagctctcttctggacttaaagtgaatttttctaagagtttgttcatgggggttaatgtggggcctgagttccttggaat |
2239053 |
T |
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| Q |
408 |
ggctgagcgtttcctttactgtaggataggctccgtcccgttcacttatcttaagttacccgtgggtaccaatcagccccttcttctatatatca |
502 |
Q |
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| T |
2239052 |
ggctgagcgtttcctttactgtaggataggctccgtcccgttcacttatcttaagttacccgtgggtaccaatcagccccttcttctatatatca |
2238958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 29681078 - 29681134
Alignment:
| Q |
132 |
gttccttttcttgttcgtggttgaggggctgagtggtttggtccggttagccgaagc |
188 |
Q |
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| T |
29681078 |
gttccttttcttgttggtggttgaaggcctcagtggtttggttcggttggccgaagc |
29681134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 12845902 - 12845736
Alignment:
| Q |
10 |
aggtggtgtaggtggatccgtgtatgtgtcttctatggtagtctctccgtcctcgtgaatggttgtccgactgaggaggttgatattcaaggagggttga |
109 |
Q |
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| T |
12845902 |
aggtggtgtaggtggatccgtgcctgtgtttcttgtggtagtctctctgtcttagtgaatgggtgcccgactgaggaggttaatatccatagagggctta |
12845803 |
T |
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| Q |
110 |
agcaatgcgaccctcttgctctgttccttttcttgttcgtggttgaggggctgagtggtttggtccg |
176 |
Q |
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| T |
12845802 |
agcaaggggatccgctagccccgttccttttcctgttagtggtggagggcctaagcggtttggtccg |
12845736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 127 - 279
Target Start/End: Original strand, 15272702 - 15272854
Alignment:
| Q |
127 |
gctctgttccttttctt-gttcgtggttgaggggctgagtggtttggtccggttagccgaagctacgagcttgttccatggttttaaggtgagtaactca |
225 |
Q |
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| T |
15272702 |
gctccgttcctttttttcgttggttgttgagggcatgagtggtttggtccggtcggccgaagctcgtggcttgtatcatggttttagggtgaggaactcg |
15272801 |
T |
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| Q |
226 |
ggcctctcgatctctcatctttaatatgccaatgatactttattcattggggaa |
279 |
Q |
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| T |
15272802 |
ggtctctcgatctctcatcttcagtatgcggatgataccttattc-ttggggaa |
15272854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 425
Target Start/End: Complemental strand, 36651864 - 36651752
Alignment:
| Q |
313 |
atccttcgctgttttgagctctcttctggacttaaagtgaattcttctaagagtttgttcatgggggctaatgtggggcctgagttccttggaatggctg |
412 |
Q |
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| T |
36651864 |
atccttcgttgttttgagcttgcttcggggcttaaggtgaatttttctaagagctcggtgatgggggtgaatgttggggacgagttccttggtttggctg |
36651765 |
T |
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| Q |
413 |
agcgtttccttta |
425 |
Q |
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| T |
36651764 |
agcgtttccttta |
36651752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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