View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254-Insertion-14 (Length: 759)
Name: NF1254-Insertion-14
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254-Insertion-14 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 324 - 751
Target Start/End: Original strand, 9650620 - 9651049
Alignment:
| Q |
324 |
gttacaagttcgatttgatatgattaatattgtccagatataattcttggtctatgataaaaatgaggttactcaatcctaagtattgcaattgcaacat |
423 |
Q |
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| T |
9650620 |
gttacaagttcgatttgatatgattaatattgtccagatataattcttgctctatgataaaaatgaggttactcaatcctaagttttgcaattgcaacat |
9650719 |
T |
|
| Q |
424 |
attgaaatttctgaaagttcttaaattttagcagcagctaaggttaagggttgcaatttatctttttctgcatcaactctttcaatcacagaagttaaac |
523 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9650720 |
attgaaatttctgaaagttcttaaattttagcagcagctaaggttcagggttgcaatttatctttttctgcatcaactctttcaatcacagaagttaaac |
9650819 |
T |
|
| Q |
524 |
tctattcattcttaccgagtcgtatatttttgtataaatctgatactttgagtgatgaacttgtagatctgggacatgagctctcatctcaaggctcttg |
623 |
Q |
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| T |
9650820 |
tctattcattcttaccgagtcgtatatttttgtataaatctgatactttgagtgatgaacttgtagatctgggacatgagctctcatctcaaggctcttg |
9650919 |
T |
|
| Q |
624 |
cagagacagaaacggagggtgtccaaggagatgatgtagctca-gttccactacaaaaatttaagcacaaagatgaaggttatgctatagactggaatcc |
722 |
Q |
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| T |
9650920 |
cagagacagaaacggagggtgtccaaggagatgatgtagctcaggttccactacaaaaatttaagcacaaagatgaaggttatgctatagactggaatcc |
9651019 |
T |
|
| Q |
723 |
tcatgcatgtc-tttatctggtaatcgctg |
751 |
Q |
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| T |
9651020 |
tcatgcatgtcttttatctggtaatcgctg |
9651049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 9650266 - 9650586
Alignment:
| Q |
8 |
ctaatgactaatgagtttaggtgtgttggtagaatgta--agcttgaagtatctgtaaaaagatagttagctacatgattgtggctggactttattgtgt |
105 |
Q |
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| T |
9650266 |
ctaatgactaatgagtttaggtgtgttggtagaatgtataagattgaagtatctgtaaaaagatagttagctacatgattgtggctggactttattgtgt |
9650365 |
T |
|
| Q |
106 |
tggtagaatgtcttgcttttacaaaccatgaagccactaattgtgaaacatagggataaaatagaatcacacaaccttgtaaattaatttttgaaataag |
205 |
Q |
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| T |
9650366 |
tggtagaatgtcttgcttttacaaaccatgaagccactaattgtgaaacatagggataaaatagaaccacacaaccttgtaaattaatttttgaaataag |
9650465 |
T |
|
| Q |
206 |
gctcatagaatgtttagcactataacaaacagttacatagatcgatgttccgatcccatggtctgattcgtgatcctacatacactggtaagataatact |
305 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9650466 |
gctcatagaatgtttagcactataacaaacagttacgtagatcgatgttccgatcccatggtctgattcgtgatcctacatacactggtaagataatact |
9650565 |
T |
|
| Q |
306 |
tatgcggttctataacatgtt |
326 |
Q |
| |
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| T |
9650566 |
tatgcggttctataacatgtt |
9650586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 3e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 474 - 724
Target Start/End: Complemental strand, 34736804 - 34736554
Alignment:
| Q |
474 |
ttgcaatttatctttttctgcatcaactctttcaatcacagaagttaaactcta-ttcattcttaccgagtcgtatatttttgtataaatctgatacttt |
572 |
Q |
| |
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||||||||||| ||| |||||| || ||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| || | |
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| T |
34736804 |
ttgcaatttatatttctctgcaccatctctttcaaacaaagaagttaaactctacttcattcttaccgagttgtatatttttgttcaaatctgattctgt |
34736705 |
T |
|
| Q |
573 |
gagtgatgaacttgtagatctgggacatgagctctcatctcaaggctcttgcagagacagaaacggagggtgtccaaggagatgatgtagctca-gttcc |
671 |
Q |
| |
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| | || || || |||||||||||||||||||||||||| || ||||| |||||||||||||| || ||||||||||||| ||||| || ||| | ||| |
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| T |
34736704 |
g--taataaatttttagatctgggacatgagctctcatcttaatgctctagcagagacagaaaccgatggtgtccaaggagttgatgcagttcaggctcc |
34736607 |
T |
|
| Q |
672 |
actacaaaaatttaagcacaaagatgaaggttatgctatagactggaatcctc |
724 |
Q |
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| T |
34736606 |
actacaaaaatttaagcacaaagatgaaggctatgctatagactggagtcctc |
34736554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 73 - 232
Target Start/End: Complemental strand, 34737234 - 34737077
Alignment:
| Q |
73 |
tagctacatgattgtggctggactttattgtgttggtagaatgtcttgcttttacaaaccatgaagccactaattgtgaaacatagggataaaatagaat |
172 |
Q |
| |
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||||||||||||||||| ||||||||||||| || | ||||||||||||||| |||| || |||||||| |||||||| | ||||||| |||| |
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| T |
34737234 |
tagctacatgattgtggttggactttattgttttttgttatggtcttgcttttacaagtcatggagacactaattatgaaacat--gtataaaatggaat |
34737137 |
T |
|
| Q |
173 |
cacacaaccttgtaaattaatttttgaaataaggctcatagaatgtttagcactataaca |
232 |
Q |
| |
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|||| |||||||||| ||||| ||||||||| ||| ||||| ||||||| ||||||||| |
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| T |
34737136 |
cacaaaaccttgtaagttaatctttgaaatatggcccatagtttgtttagtactataaca |
34737077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 387 - 425
Target Start/End: Complemental strand, 34736882 - 34736844
Alignment:
| Q |
387 |
tgaggttactcaatcctaagtattgcaattgcaacatat |
425 |
Q |
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| T |
34736882 |
tgaggttactcagtcctaagtattgcaattgcaacatat |
34736844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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