View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254-Insertion-2 (Length: 157)
Name: NF1254-Insertion-2
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 75; Significance: 7e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 7e-35
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 37616193 - 37616267
Alignment:
| Q |
8 |
catagaaagttatagggagataaaagcagatattcacaggatccaaatagtatggatgaaataaaggaatgctat |
82 |
Q |
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| T |
37616193 |
catagaaagttatagggagataaaagcagatattcacaggatccaaatagtatggatgaaataaaggaatgctat |
37616267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 37616319 - 37616389
Alignment:
| Q |
84 |
ttttgcaaaatcacaatggatcgcggtgattctgatatactcaccgtgatacgaaacgtacattaaatatt |
154 |
Q |
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| T |
37616319 |
ttttgcaaaattacgatggatcgcggtgattctgatatactcaccgtgatattaaacgtacattaaatatt |
37616389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 37629843 - 37629874
Alignment:
| Q |
47 |
gatccaaatagtatggatgaaataaaggaatg |
78 |
Q |
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| T |
37629843 |
gatccaaatagtatggatgaaataaaagaatg |
37629874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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