View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254-Insertion-4 (Length: 246)
Name: NF1254-Insertion-4
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 53566535 - 53566681
Alignment:
| Q |
7 |
aaggtcttgtaaacagtttctaacggaattgaatgaaaaaaggataacaatataaacatgtaataagttaaaagaccaatttattatataaaaaacttga |
106 |
Q |
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| T |
53566535 |
aaggtcttgtaaacagtttctaacggaattgaatgaaaaaaggataacaatataaacatgtaataagttaaaagaccaatttattatataaaaaacttga |
53566634 |
T |
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| Q |
107 |
tagaatccctccagcccaaaataaatgatattgttgacagttacgca |
153 |
Q |
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| T |
53566635 |
tagaatccctccagcccgaaataattgatattgttgaccgttgcgca |
53566681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 53566570 - 53566663
Alignment:
| Q |
153 |
aaaaaaggataacaatataaacatgtaataagttaaaagaccaatttattatataaaaaacttgatagaatccctccggcccaaaataactgat |
246 |
Q |
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| T |
53566570 |
aaaaaaggataacaatataaacatgtaataagttaaaagaccaatttattatataaaaaacttgatagaatccctccagcccgaaataattgat |
53566663 |
T |
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