View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254-Insertion-5 (Length: 165)
Name: NF1254-Insertion-5
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 38048471 - 38048415
Alignment:
| Q |
8 |
cgaatcacattgaatgctttggaaaagaaacatatagaattgaataataacgacaac |
64 |
Q |
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| T |
38048471 |
cgaatcacattgaatgctttggaaaagaaacatatagaattgaataataacaacaac |
38048415 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 38048373 - 38048317
Alignment:
| Q |
107 |
gtatgttttctagttcgctttattttcttatctatatatatagtatatgtgatccatag |
165 |
Q |
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| T |
38048373 |
gtatgttttctagttcgctttattttcttatctata--tatagtatatgcgatccatag |
38048317 |
T |
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