View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1254-Insertion-7 (Length: 341)

Name: NF1254-Insertion-7
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1254-Insertion-7
NF1254-Insertion-7
[»] chr4 (1 HSPs)
chr4 (3-341)||(43339990-43340327)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 3 - 341
Target Start/End: Complemental strand, 43340327 - 43339990
Alignment:
Q  3 caacaattaggacagaaccaagtaaaccgacaacctagaagaagaaggtctaccaggcccataagggagacaaagttaccgaatttctaagagtcaccat 102  Q
    |||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||    
T  43340327 caaccattaggacggaaccaagtaaaccgacaacctagaaggagaaggtctaccaagcccataagggagacaaagttaccaaatttctaagagtcgccat 43340228  T
Q  103 ttccccttctcttgctcgcttcgaaaaatcctttctttccccgaattaaatctccaacaatgcatcacacatcccacatcactttttccctgccagggaa 202  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43340227 ttccccttctcttgctcgcttcgaaaagtcctttctttccccgaattaaatctccaacaatgcatcacacatcccacatcactttttccctgccagggaa 43340128  T
Q  203 cctttaaaataaacattcaccacaaaatcaacgagaacaagtaacccccgatcgagatataccccaacgaaactcaacccataaaataaaaacattgtct 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  43340127 cctttaaaataaacattcaccacaaaatcaacgagaacaagtaacccccgatcgagata-accccaacgaaactcaaaccataaaataaaaacattgtct 43340029  T
Q  303 tccctctagaaccatacgagatagataggtaaccattta 341  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43340028 tccctctagaaccatacgagatagataggtaaccattta 43339990  T

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