View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1254-Insertion-8 (Length: 189)

Name: NF1254-Insertion-8
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1254-Insertion-8
NF1254-Insertion-8
[»] chr3 (27 HSPs)
chr3 (6-189)||(24649639-24649822)
chr3 (10-144)||(28745770-28745903)
chr3 (10-144)||(29067284-29067417)
chr3 (8-137)||(30727694-30727822)
chr3 (9-144)||(20756038-20756172)
chr3 (10-144)||(24620196-24620332)
chr3 (15-144)||(17064326-17064454)
chr3 (13-144)||(39427905-39428035)
chr3 (10-144)||(8156126-8156260)
chr3 (10-104)||(27676356-27676450)
chr3 (10-95)||(17796377-17796462)
chr3 (10-95)||(19104817-19104902)
chr3 (28-141)||(22494780-22494892)
chr3 (11-144)||(3449288-3449419)
chr3 (14-95)||(17796272-17796353)
chr3 (10-95)||(17796486-17796571)
chr3 (14-95)||(19104712-19104793)
chr3 (10-95)||(19104926-19105011)
chr3 (20-104)||(10872981-10873065)
chr3 (19-91)||(21963438-21963510)
chr3 (19-91)||(21985874-21985946)
chr3 (10-76)||(25870439-25870505)
chr3 (10-95)||(15806550-15806634)
chr3 (11-89)||(28135723-28135801)
chr3 (83-144)||(42696920-42696980)
chr3 (9-104)||(22137277-22137372)
chr3 (14-53)||(42696870-42696909)
[»] chr4 (24 HSPs)
chr4 (10-184)||(8011172-8011345)
chr4 (10-144)||(5361959-5362092)
chr4 (7-144)||(9770109-9770245)
chr4 (10-144)||(8889228-8889361)
chr4 (10-144)||(13551618-13551751)
chr4 (10-144)||(36120824-36120957)
chr4 (10-144)||(10142899-10143032)
chr4 (10-95)||(4156763-4156848)
chr4 (12-144)||(5375666-5375797)
chr4 (10-143)||(13023567-13023702)
chr4 (11-105)||(7044728-7044822)
chr4 (11-144)||(17466080-17466212)
chr4 (10-96)||(23065006-23065092)
chr4 (10-144)||(37240262-37240390)
chr4 (10-95)||(18459752-18459837)
chr4 (10-95)||(24719517-24719602)
chr4 (14-89)||(6347114-6347189)
chr4 (14-104)||(7815561-7815651)
chr4 (10-90)||(7452420-7452499)
chr4 (9-53)||(9149821-9149865)
chr4 (9-144)||(9911407-9911542)
chr4 (142-189)||(6347015-6347062)
chr4 (65-104)||(10394565-10394604)
chr4 (142-189)||(18459648-18459695)
[»] chr1 (23 HSPs)
chr1 (10-184)||(17055955-17056128)
chr1 (10-144)||(9955031-9955164)
chr1 (11-144)||(42180061-42180193)
chr1 (12-144)||(12513283-12513414)
chr1 (10-137)||(21846271-21846397)
chr1 (9-144)||(13276262-13276396)
chr1 (10-144)||(18304807-18304940)
chr1 (10-144)||(23528656-23528789)
chr1 (10-144)||(41032666-41032799)
chr1 (12-144)||(19009942-19010073)
chr1 (10-144)||(9327211-9327344)
chr1 (9-85)||(30619074-30619150)
chr1 (10-144)||(9352059-9352192)
chr1 (14-144)||(13100195-13100324)
chr1 (10-104)||(14074405-14074499)
chr1 (10-104)||(25146803-25146897)
chr1 (9-144)||(9128836-9128970)
chr1 (9-91)||(12800629-12800711)
chr1 (10-76)||(34478833-34478899)
chr1 (10-94)||(18337567-18337650)
chr1 (17-143)||(16125452-16125580)
chr1 (11-144)||(17869746-17869873)
chr1 (13-95)||(27917496-27917578)
[»] chr6 (25 HSPs)
chr6 (7-144)||(26053292-26053428)
chr6 (7-144)||(26073345-26073481)
chr6 (10-136)||(6943464-6943589)
chr6 (10-144)||(27233273-27233406)
chr6 (10-144)||(30912408-30912541)
chr6 (9-144)||(17250056-17250190)
chr6 (10-144)||(19748333-19748466)
chr6 (10-144)||(15528106-15528239)
chr6 (10-144)||(7223519-7223645)
chr6 (13-143)||(2912245-2912373)
chr6 (10-144)||(17543736-17543869)
chr6 (22-144)||(23897823-23897944)
chr6 (9-91)||(7918429-7918511)
chr6 (14-140)||(10509023-10509148)
chr6 (10-144)||(11327567-11327700)
chr6 (10-95)||(18491081-18491166)
chr6 (10-144)||(17103202-17103328)
chr6 (18-144)||(22498881-22499006)
chr6 (12-87)||(3573984-3574059)
chr6 (10-89)||(5422798-5422877)
chr6 (10-87)||(10958239-10958316)
chr6 (13-94)||(33583774-33583855)
chr6 (131-189)||(3573922-3573980)
chr6 (10-144)||(21354748-21354873)
chr6 (19-86)||(8285776-8285843)
[»] chr2 (20 HSPs)
chr2 (6-189)||(25539177-25539359)
chr2 (10-144)||(30432419-30432552)
chr2 (10-144)||(31237973-31238106)
chr2 (10-144)||(1404783-1404916)
chr2 (10-189)||(19491855-19492029)
chr2 (10-144)||(36429848-36429981)
chr2 (10-140)||(23863321-23863450)
chr2 (10-104)||(1690797-1690891)
chr2 (12-143)||(31578007-31578136)
chr2 (10-147)||(15588843-15588978)
chr2 (10-144)||(20063714-20063847)
chr2 (11-144)||(35565950-35566082)
chr2 (9-95)||(16766709-16766795)
chr2 (10-104)||(5395683-5395777)
chr2 (9-53)||(29660892-29660936)
chr2 (42-95)||(31023255-31023308)
chr2 (38-95)||(34841584-34841641)
chr2 (152-184)||(27406852-27406884)
chr2 (14-53)||(15627659-15627698)
chr2 (10-53)||(19245153-19245196)
[»] chr8 (21 HSPs)
chr8 (10-144)||(5922049-5922182)
chr8 (8-144)||(17646991-17647126)
chr8 (10-142)||(45403029-45403160)
chr8 (12-144)||(19704451-19704583)
chr8 (12-144)||(15294672-15294803)
chr8 (12-144)||(15475041-15475172)
chr8 (14-143)||(3094250-3094378)
chr8 (10-144)||(11879600-11879733)
chr8 (10-144)||(11897016-11897149)
chr8 (22-144)||(22910198-22910319)
chr8 (11-144)||(29384313-29384444)
chr8 (10-85)||(477101-477176)
chr8 (56-147)||(6810868-6810957)
chr8 (14-144)||(31424167-31424296)
chr8 (10-126)||(27836478-27836593)
chr8 (10-89)||(15761489-15761568)
chr8 (62-144)||(23142227-23142308)
chr8 (14-126)||(6292356-6292467)
chr8 (10-89)||(24056618-24056697)
chr8 (10-53)||(17788392-17788435)
chr8 (14-53)||(23136353-23136392)
[»] chr7 (30 HSPs)
chr7 (10-144)||(5715290-5715422)
chr7 (10-125)||(26281324-26281438)
chr7 (10-144)||(9685240-9685373)
chr7 (10-144)||(24725473-24725606)
chr7 (7-144)||(11326383-11326519)
chr7 (10-144)||(24990067-24990200)
chr7 (10-144)||(39182260-39182392)
chr7 (12-144)||(8346529-8346660)
chr7 (10-150)||(22687654-22687793)
chr7 (10-144)||(4247356-4247489)
chr7 (10-144)||(7730339-7730471)
chr7 (10-144)||(8343796-8343929)
chr7 (17-95)||(8571250-8571328)
chr7 (10-140)||(14055251-14055380)
chr7 (10-140)||(14365279-14365408)
chr7 (10-144)||(27221418-27221551)
chr7 (11-144)||(5058530-5058662)
chr7 (19-144)||(11324988-11325111)
chr7 (48-144)||(17811385-17811480)
chr7 (9-144)||(44944841-44944979)
chr7 (10-143)||(8330042-8330174)
chr7 (9-96)||(21846469-21846555)
chr7 (62-144)||(27509939-27510020)
chr7 (10-104)||(30294175-30294266)
chr7 (10-95)||(8630002-8630087)
chr7 (65-144)||(1977707-1977785)
chr7 (142-189)||(21157714-21157761)
chr7 (9-53)||(6916785-6916829)
chr7 (14-101)||(4574475-4574562)
chr7 (109-144)||(21846340-21846375)
[»] chr5 (17 HSPs)
chr5 (10-144)||(18051526-18051659)
chr5 (10-144)||(21059152-21059284)
chr5 (9-144)||(43234867-43235001)
chr5 (10-144)||(19578942-19579075)
chr5 (11-118)||(23172454-23172560)
chr5 (18-137)||(27340189-27340307)
chr5 (10-144)||(22645715-22645848)
chr5 (10-144)||(38158250-38158383)
chr5 (11-144)||(18843716-18843848)
chr5 (10-95)||(20923718-20923803)
chr5 (12-84)||(19042444-19042516)
chr5 (21-144)||(41688661-41688782)
chr5 (62-142)||(20320995-20321074)
chr5 (144-189)||(26021408-26021453)
chr5 (142-184)||(43005898-43005940)
chr5 (10-87)||(13342039-13342115)
chr5 (12-76)||(20320926-20320990)
[»] scaffold0186 (1 HSPs)
scaffold0186 (10-144)||(8443-8576)
[»] scaffold0042 (1 HSPs)
scaffold0042 (10-144)||(93702-93833)
[»] scaffold0510 (1 HSPs)
scaffold0510 (22-144)||(96-218)
[»] scaffold0603 (1 HSPs)
scaffold0603 (10-89)||(9070-9149)
[»] scaffold0417 (1 HSPs)
scaffold0417 (10-144)||(7451-7584)
[»] scaffold0048 (2 HSPs)
scaffold0048 (10-88)||(48839-48917)
scaffold0048 (142-189)||(61323-61370)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 24649822 - 24649639
Alignment:
Q  6 cagtattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24649822 cagtattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaattccaaaataa 24649723  T
Q  106 agcaaaattcatcaattttgactgtgattttacgatttcatacaatatcgcaggattttaaagggttttgaagaattttatcca 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24649722 agcaaaattcatcaattttgactgtgattttacgatttcatacaatatcgcaggattttaaagggttttgaagaattttatcca 24649639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 28745770 - 28745903
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||  ||||| |||||||||||||||||||||| ||||||||||| |||||||| | ||    
T  28745770 attgttgtcaaaatcccgatttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatctcaaaataga-ca 28745868  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||||||| ||||||| || ||||||||||||||    
T  28745869 aaattcatcgattttgattgcgattttacgatttc 28745903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 29067284 - 29067417
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||  ||||||  ||||||||  ||||| ||||||||||||||||||||||||||||||||||  ||||||| | ||    
T  29067284 attgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaataga-ca 29067382  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| |||||||||||||||||    
T  29067383 aaatccatcgattttgattgtgattttacgatttc 29067417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 30727822 - 30727694
Alignment:
Q  8 gtattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaag 107  Q
    |||||||| ||||||||| |||||||||| |||||||  | |||||  ||||| ||||||||||||||||||||||| ||||||||||  ||||||| |     
T  30727822 gtattgttatcaaaatcctgacttaaatcttaaaatcctgaattttacgactttcttcaccttcaacgactcaaatctatagtagaatcccaaaataga- 30727724  T
Q  108 caaaattcatcaattttgactgtgatttta 137  Q
    ||||||||||| ||||||| || |||||||    
T  30727723 caaaattcatcgattttgattgcgatttta 30727694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 20756038 - 20756172
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagc 108  Q
    |||||||||||||||||||||||||||  ||||||  ||||||||  || || |||||||||||| ||||||||||||||||||||| | ||||| | ||    
T  20756038 tattgttgtcaaaatcccgacttaaattataaaattcaggattttgcgattttcttcaccttcaatgactcaaatccatagtagaatcttaaaat-aggc 20756136  T
Q  109 aaaattcatcaattttgactgtgattttacgatttc 144  Q
    |||||  ||| ||||||| ||  |||||||||||||    
T  20756137 aaaatcaatcgattttgattgcaattttacgatttc 20756172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 24620332 - 24620196
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggatttt---ttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaa 106  Q
    |||||||||||||| |||||||||||| |||||| || ||||||     ||||| |||||||||||||||||||||| || |||||||| ||||||| |     
T  24620332 attgttgtcaaaattccgacttaaatcctaaaatttaagattttgcgacgactttcttcaccttcaacgactcaaattcacagtagaatctcaaaat-ag 24620234  T
Q  107 gcaaaattcatcaattttgactgtgattttacgatttc 144  Q
    |||||||||||| ||||| | ||  |||||||||||||    
T  24620233 gcaaaattcatcgattttaattgcaattttacgatttc 24620196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 17064326 - 17064454
Alignment:
Q  15 tgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaatt 114  Q
    |||||||||||||||||||||| ||||||  ||||||||  || |   ||||||||||||||||| ||| ||||||||||||  |||||| | |||||||    
T  17064326 tgtcaaaatcccgacttaaatcttaaaattcaggattttgcgattgtgttcaccttcaacgactccaattcatagtagaattctaaaataga-caaaatt 17064424  T
Q  115 catcaattttgactgtgattttacgatttc 144  Q
    |||| ||||| | || ||||||||||||||    
T  17064425 catcgatttttattgcgattttacgatttc 17064454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 39427905 - 39428035
Alignment:
Q  13 gttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaa 112  Q
    |||||||||||||||| ||||||  |||||||  |||||||   |||| |||||| |||||||||||||||| ||||||||||  ||||||| | ||||     
T  39427905 gttgtcaaaatcccgatttaaattttaaaatcctggattttgcaactttcttcacgttcaacgactcaaatcgatagtagaatcccaaaataga-caaag 39428003  T
Q  113 ttcatcaattttgactgtgattttacgatttc 144  Q
    | |||| ||||||| || ||||||||||||||    
T  39428004 tccatcgattttgattgcgattttacgatttc 39428035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 8156260 - 8156126
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||| ||||||||  ||||||  || |||||  || ||  ||||||||||| ||||||||||||||||| |||  |||||| |  ||    
T  8156260 attgttgtcaaaatcccaacttaaattctaaaattcagaattttacgatttttttcaccttcaatgactcaaatccatagtataatcccaaaattagaca 8156161  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| || ||||||||||||||    
T  8156160 aaatccatcgattttgattgcgattttacgatttc 8156126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 27676356 - 27676450
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaata 104  Q
    |||||||||||||||| |||||||||||||||||  ||||||||  |||||  ||||||||| | ||||||||||||||| |||||  |||||||    
T  27676356 attgttgtcaaaatcctgacttaaatcgtaaaatgcaggattttgcgactttattcaccttctatgactcaaatccatagcagaatcccaaaata 27676450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 17796377 - 17796462
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    |||||||||||||| |||||||||||| ||||||||||||||||  |||||  |||| ||||||| |||||||| ||||| |||||    
T  17796377 attgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatcttcaacaactcaaattcatagcagaat 17796462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 19104817 - 19104902
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    |||||||||||||| |||||||||||| ||||||||||||||||  |||||  |||| ||||||| |||||||| ||||| |||||    
T  19104817 attgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatcttcaacaactcaaattcatagcagaat 19104902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 22494892 - 22494780
Alignment:
Q  28 acttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaattcatcaattttgac 127  Q
    ||||||||| ||||||||  ||||||  |||||  |||||||||||||||| |||| |||||||||||   |||||||| ||||||||||| |||||||     
T  22494892 acttaaatcctaaaatctgagattttgcgacttttttcaccttcaacgactaaaattcatagtagaatcctaaaataaa-caaaattcatcgattttgat 22494794  T
Q  128 tgtgattttacgat 141  Q
    || |||||||||||    
T  22494793 tgcgattttacgat 22494780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 3449419 - 3449288
Alignment:
Q  11 ttgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaa 110  Q
    |||||||||||||||||||||||||| ||||||  ||||||||  ||||| ||| |||||||||| || ||||| ||||||||||   ||||| | ||||    
T  3449419 ttgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttctttaccttcaacg-ctaaaatctatagtagaatcctaaaat-aggcaa 3449322  T
Q  111 aattcatcaattttgactgtgattttacgatttc 144  Q
    ||| |||  ||||| | || ||||||||||||||    
T  3449321 aatccatagatttttattgcgattttacgatttc 3449288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 17796272 - 17796353
Alignment:
Q  14 ttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    |||||||||| || ||||||||| |||||||||||||||| ||||||  |||||||||||| ||| |||| ||||| |||||    
T  17796272 ttgtcaaaattccaacttaaatcataaaatctaggattttgtgactttattcaccttcaacaactaaaattcatagcagaat 17796353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 17796486 - 17796571
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    ||||||||||||||  ||| ||||||| ||||||||||||||||| |||||  |||||||||||| ||| |||| ||||| |||||    
T  17796486 attgttgtcaaaatttcgaattaaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaat 17796571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 19104712 - 19104793
Alignment:
Q  14 ttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    |||||||||| || ||||||||| |||||||||||||||| ||||||  |||||||||||| ||| |||| ||||| |||||    
T  19104712 ttgtcaaaattccaacttaaatcataaaatctaggattttgtgactttattcaccttcaacaactaaaattcatagcagaat 19104793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 19104926 - 19105011
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    ||||||||||||||  ||| ||||||| ||||||||||||||||| |||||  |||||||||||| ||| |||| ||||| |||||    
T  19104926 attgttgtcaaaatttcgaattaaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaat 19105011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 10873065 - 10872981
Alignment:
Q  20 aaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaata 104  Q
    ||||||||| | ||||| ||||||| |||||||| |||  |  ||||||||||||||||||||||||||| ||||| ||||||||    
T  10873065 aaatcccgattgaaatcctaaaatccaggattttgtgatattattcaccttcaacgactcaaatccatagcagaatctcaaaata 10872981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 21963438 - 21963510
Alignment:
Q  19 aaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagta 91  Q
    |||||||||||||||||| ||||||  | ||||||  ||||| ||||||||| ||||||||||||||||||||    
T  21963438 aaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagta 21963510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 21985874 - 21985946
Alignment:
Q  19 aaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagta 91  Q
    |||||||||||||||||| ||||||  | ||||||  ||||| ||||||||| ||||||||||||||||||||    
T  21985874 aaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagta 21985946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 25870505 - 25870439
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacga 76  Q
    ||||||||||||||| ||||||||||| ||||||| | |||||| |||||| ||||| |||||||||    
T  25870505 attgttgtcaaaatctcgacttaaatcctaaaatccaagattttgtgactttcttcatcttcaacga 25870439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 15806634 - 15806550
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    |||||||||||||||| |||||||||| || |||| || |||||  |||||  ||||||||||| ||||||||||||||| |||||    
T  15806634 attgttgtcaaaatcc-gacttaaatcctacaatccagaattttgcgactttattcaccttcaatgactcaaatccatagcagaat 15806550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 28135723 - 28135801
Alignment:
Q  11 ttgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatag 89  Q
    ||||||||||||| |||| ||||||||||||||  ||||||||  |||||  ||||| ||||  |||||||||||||||    
T  28135723 ttgttgtcaaaattccgatttaaatcgtaaaattcaggattttgcgactttattcactttcagtgactcaaatccatag 28135801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 42696920 - 42696980
Alignment:
Q  83 tccatagtagaatttcaaaataaagcaaaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||||||||||| ||||||||  |||||||||||| ||||||| || ||||||||||||||    
T  42696920 tccatagtagaatctcaaaatag-gcaaaattcatcgattttgattgcgattttacgatttc 42696980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 22137277 - 22137372
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaata 104  Q
    ||||||| | ||||||| |||||||||| ||||||  | ||| ||  ||||| ||||||||| |||| ||||||||||||||| |||  |||||||    
T  22137277 tattgtttttaaaatcctgacttaaatcctaaaattcaagatgttacgactttcttcaccttgaacgcctcaaatccatagtaaaatcccaaaata 22137372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 42696870 - 42696909
Alignment:
Q  14 ttgtcaaaatcccgacttaaatcgtaaaatctaggatttt 53  Q
    ||||||||||||||||||||||| ||||||  ||||||||    
T  42696870 ttgtcaaaatcccgacttaaatcataaaattcaggatttt 42696909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 4e-49; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 8011345 - 8011172
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||| ||| ||||| ||||||  ||||||||  ||||| ||||||||||||||||||||||||||||||||||  |||||| | |||    
T  8011345 attgttgtcaaaatcccaactcaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatga-gca 8011247  T
Q  110 aaattcatcaattttgactgtgattttacgatttcatacaatatcgcaggattttaaagggttttgaagaatttt 184  Q
    ||||||||| ||||||| || |||||| |||||||| |||| |||||||||||||||||||||||||||||||||    
T  8011246 aaattcatcgattttgattgcgattttgcgatttcaaacaaaatcgcaggattttaaagggttttgaagaatttt 8011172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 5362092 - 5361959
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||  ||||| ||||| ||||||||||||||||||||||||||||| |||||| | |||    
T  5362092 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaattccaaaat-aggca 5361994  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||  |||| ||||||| || ||||||||||||||    
T  5361993 aaacccatcgattttgattgagattttacgatttc 5361959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 8e-32
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 9770109 - 9770245
Alignment:
Q  7 agtattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaa 106  Q
    ||||||||||| |||||| ||||||||||  |||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||   |||||| |    
T  9770109 agtattgttgttaaaatctcgacttaaattctaaaatctaggattttgtgacttttttcaccttcaacgactcaaatccatagtagaatcctaaaataga 9770208  T
Q  107 gcaaaattcatcaattttgactgtgattttacgatttc 144  Q
     ||||||  ||||||||||| || ||||||||||||||    
T  9770209 -caaaatctatcaattttgattgcgattttacgatttc 9770245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 8889228 - 8889361
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||| |||||||||||||||||||||| ||||||| |||||||| ||| || ||||||| |||||||||||||| |||| ||||||  |||||| | |||    
T  8889228 attgatgtcaaaatcccgacttaaatcctaaaatccaggattttgtgaatttcttcaccatcaacgactcaaattcataatagaatcccaaaat-aggca 8889326  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||||||| ||||||| || ||||||||||||||    
T  8889327 aaattcatcgattttgattgcgattttacgatttc 8889361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 13551751 - 13551618
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||| ||||||| ||| |||||| |||||||||  |||||  |||||||||||||||||||||||||| ||||||||||||||| | ||    
T  13551751 attgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaataga-ca 13551653  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||| | || ||||||| ||||||    
T  13551652 aaatccatcgattttaattgcgattttatgatttc 13551618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 36120824 - 36120957
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||||||||| |||| ||||||  |||||| |||||||||  || || ||||||||||||||||| ||||||||| || ||||  ||||| |||||    
T  36120824 attgttgtcaaaattccgatttaaattttaaaatttaggattttgcgattttcttcaccttcaacgacttaaatccataataaaattctaaaat-aagca 36120922  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||||||| ||||||| || ||||||||||||||    
T  36120923 aaattcatcgattttgattgcgattttacgatttc 36120957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 10142899 - 10143032
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||| |||||||||||||||||  |||||| ||  |||||  ||||| || ||||||||| ||||||| ||||||||| |||| ||||||| | ||    
T  10142899 attgttgtgaaaatcccgacttaaattctaaaatttaatattttgcgactttctccaccttcaatgactcaagtccatagtataattccaaaataga-ca 10142997  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| |||||||||||||||||    
T  10142998 aaatccatcgattttgattgtgattttacgatttc 10143032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 4156763 - 4156848
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| ||||||  |||||||| |||||||||||||  |||||||||    
T  4156763 attgttgtcaaaatcccgacttaaatcttaaaatttaggattttatgactttattcacctttaacgactcaaatctgtagtagaat 4156848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 5375666 - 5375797
Alignment:
Q  12 tgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaa 111  Q
    ||||||||||||||| || |||||  |||||| || ||||||  ||||| ||||||||||||||||| |||| |||| |||||||| |||||| | ||||    
T  5375666 tgttgtcaaaatcccaacctaaattctaaaatttaagattttgcgactttcttcaccttcaacgactaaaattcataatagaattttaaaataga-caaa 5375764  T
Q  112 attcatcaattttgactgtgattttacgatttc 144  Q
    ||||||| | ||||| || ||||||||||||||    
T  5375765 attcatcgactttgattgcgattttacgatttc 5375797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 13023567 - 13023702
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaa-tctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaag- 107  Q
    ||||||||||||||||| ||||||||| ||||| | |||||||||  ||||| |||||||||||| |||||||||||||||||||||  ||||| | ||     
T  13023567 attgttgtcaaaatcccaacttaaatcctaaaaatttaggattttgcgactttcttcaccttcaatgactcaaatccatagtagaatcccaaaaaataga 13023666  T
Q  108 caaaattcatcaattttgactgtgattttacgattt 143  Q
     |||||  ||| ||||||| || |||||||||||||    
T  13023667 taaaatcaatcgattttgattgcgattttacgattt 13023702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 7044728 - 7044822
Alignment:
Q  11 ttgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataa 105  Q
    |||||||||||||||||||||||||| ||||||| | ||||||   ||||  ||||||||||||||||||||||||||| |||||  ||||||||    
T  7044728 ttgttgtcaaaatcccgacttaaatcctaaaatccatgattttgcaactttattcaccttcaacgactcaaatccatagcagaatcccaaaataa 7044822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 17466080 - 17466212
Alignment:
Q  11 ttgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaa 110  Q
    ||||||||||||| || ||||||||| |||||| |||||||||  || || ||||| ||| || |||||||||||||| ||||||   ||||| ||||||    
T  17466080 ttgttgtcaaaattccaacttaaatcttaaaatttaggattttgcgattttcttcatctttaaggactcaaatccataatagaatcctaaaat-aagcaa 17466178  T
Q  111 aattcatcaattttgactgtgattttacgatttc 144  Q
    ||| |||| |||| || || ||||||||||||||    
T  17466179 aatccatcgatttagattgcgattttacgatttc 17466212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 23065092 - 23065006
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatt 96  Q
    |||||||| |||| ||||||||||||  ||||||| || ||||| | |||| |||||| ||||||||||||||||||| ||||||||    
T  23065092 attgttgttaaaaccccgacttaaattctaaaatccagtattttgtaactttcttcacattcaacgactcaaatccattgtagaatt 23065006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 37240262 - 37240390
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||| |||||||| ||||||||| |||||| |||    ||  |||||  ||||||||||||||||||||||||||||||||   |||||| | |||    
T  37240262 attgttgttaaaatccctacttaaatcctaaaatttag----ttacgacttttttcaccttcaacgactcaaatccatagtagaa-cccaaaat-aggca 37240355  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
     |||||||| ||||||| || ||||||||||||||    
T  37240356 taattcatcgattttgattgcgattttacgatttc 37240390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 18459837 - 18459752
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    |||||||| |||||||||||| ||||| ||||||| | ||||||  ||||   ||||| ||||||||||||||||||||| |||||    
T  18459837 attgttgtaaaaatcccgactaaaatcctaaaatccaagattttgcgactgtattcactttcaacgactcaaatccatagcagaat 18459752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 24719517 - 24719602
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    ||||||||||||||| |||||||| |  ||||||  | ||||||  |||||  ||||||||||||||||||||||||||| |||||    
T  24719517 attgttgtcaaaatctcgacttaatttctaaaattcaagattttgcgactttattcaccttcaacgactcaaatccatagcagaat 24719602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 6347189 - 6347114
Alignment:
Q  14 ttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatag 89  Q
    |||||||||| || ||||||||| ||||||| ||||||||   ||||  || ||||||||||||||||||||||||    
T  6347189 ttgtcaaaattccaacttaaatcctaaaatccaggattttgcaactttatttaccttcaacgactcaaatccatag 6347114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 7815561 - 7815651
Alignment:
Q  14 ttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaata 104  Q
    |||| |||||||||||||||||| ||||||  || ||||| ||||||  |||| ||| | ||||||||| ||||||||||||  |||||||    
T  7815561 ttgttaaaatcccgacttaaatcctaaaatacagcattttgtgactttattcagcttaagcgactcaaacccatagtagaatcccaaaata 7815651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 7452420 - 7452499
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagt 90  Q
    |||||||| |||||||||||||||||  ||||||| || |||||   ||||  ||||||||||||||||| ||||||||||    
T  7452420 attgttgtgaaaatcccgacttaaattctaaaatccagaattttgcaactttattcaccttcaacgactc-aatccatagt 7452499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 9149865 - 9149821
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaatcgtaaaatctaggatttt 53  Q
    |||||| ||||||||||||||||||||| |||||| |||||||||    
T  9149865 tattgtggtcaaaatcccgacttaaatcctaaaatttaggatttt 9149821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 9911542 - 9911407
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaa-tcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaag 107  Q
    |||||||||| ||||||||| ||||| || ||||||  | ||||||   |||| |||||||||||||| |  ||||||||||||||||   |||||   |    
T  9911542 tattgttgtctaaatcccgatttaaaatcctaaaattcaagattttgcaactttcttcaccttcaacggcctaaatccatagtagaatcctaaaat-tgg 9911444  T
Q  108 caaaattcatcaattttgactgtgattttacgatttc 144  Q
    |||||| |||| ||||||| || ||||||||||||||    
T  9911443 caaaatccatcgattttgattgcgattttacgatttc 9911407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 6347062 - 6347015
Alignment:
Q  142 ttcatacaatatcgcaggattttaaagggttttgaagaattttatcca 189  Q
    |||| |||| ||||||||||||||||||||||||||| ||||| ||||    
T  6347062 ttcacacaaaatcgcaggattttaaagggttttgaaggattttgtcca 6347015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 10394565 - 10394604
Alignment:
Q  65 caccttcaacgactcaaatccatagtagaatttcaaaata 104  Q
    |||||||||||||| |||| ||||||||||||| ||||||    
T  10394565 caccttcaacgacttaaattcatagtagaattttaaaata 10394604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 18459695 - 18459648
Alignment:
Q  142 ttcatacaatatcgcaggattttaaagggttttgaagaattttatcca 189  Q
    ||||||||| || ||||||||||||| |||||||||| ||||| ||||    
T  18459695 ttcatacaaaattgcaggattttaaacggttttgaaggattttgtcca 18459648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 6e-42; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 17056128 - 17055955
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||| |||||||||| || ||||||| ||||||| ||||||||   | || || |||||||||||||||| |||||||||||||||| ||||||| | |    
T  17056128 attgtagtcaaaatcctgatttaaatcctaaaatccaggattttgcaattttctccaccttcaacgactcagatccatagtagaattttaaaataa-gta 17056030  T
Q  110 aaattcatcaattttgactgtgattttacgatttcatacaatatcgcaggattttaaagggttttgaagaatttt 184  Q
    |||| |||| ||||||| || |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  17056029 aaatccatcgattttgattgcgattttacgatttcatacaaaatcgcaagattttaaagggttttgaagaatttt 17055955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 9955164 - 9955031
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||  ||||| ||||||||||||||||| |||||||  |||||||  |||||| |||||    
T  9955164 attgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgacttaaatccaatgtagaatcccaaaat-aagca 9955066  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| || ||||||||||||||    
T  9955065 aaatccatcgattttgattgcgattttacgatttc 9955031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 42180193 - 42180061
Alignment:
Q  11 ttgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaa 110  Q
    |||||||||||||||| ||||||||  ||||||  ||||||||  ||||| |||| |||||||||| |||||||||||||||||||||||||| | ||||    
T  42180193 ttgttgtcaaaatcccaacttaaattctaaaattcaggattttgcgactttcttccccttcaacgagtcaaatccatagtagaatttcaaaat-aggcaa 42180095  T
Q  111 aattcatcaattttgactgtgattttacgatttc 144  Q
    ||| |||| ||||||| ||||||| |||||||||    
T  42180094 aatacatcgattttgattgtgattctacgatttc 42180061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 12513283 - 12513414
Alignment:
Q  12 tgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaa 111  Q
    ||||||||||||||||||||||||| || |||||||||||||  ||||| ||||| |||||||||||||||||||||||| |||   ||||| || ||||    
T  12513283 tgttgtcaaaatcccgacttaaatcctacaatctaggattttgcgactttcttcagcttcaacgactcaaatccatagtaaaatcataaaat-aatcaaa 12513381  T
Q  112 attcatcaattttgactgtgattttacgatttc 144  Q
    || |||| ||||||| || ||||||||||||||    
T  12513382 atccatcgattttgattgcgattttacgatttc 12513414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 21846397 - 21846271
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||| ||||||| ||||||| ||||||||  |||||  ||||||||||||||||||||||||||||||||| |||||||| |  |    
T  21846397 attgttgtcaaaatcccgagttaaatcctaaaatccaggattttgcgacttttttcaccttcaacgactcaaatccatagtagaatctcaaaataga-aa 21846299  T
Q  110 aaattcatcaattttgactgtgatttta 137  Q
    |||| |||| ||||||| || |||||||    
T  21846298 aaatccatcgattttgattgcgatttta 21846271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 13276396 - 13276262
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagc 108  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||  ||||| ||||| ||||||||||  ||||||||||||||||   ||||| | ||    
T  13276396 tattgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcatcttcaacgacctaaatccatagtagaatcctaaaat-aggc 13276298  T
Q  109 aaaattcatcaattttgactgtgattttacgatttc 144  Q
    |||||  ||| ||||||| || ||||||||||||||    
T  13276297 aaaatcaatcgattttgattgcgattttacgatttc 13276262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 18304940 - 18304807
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttc-aacgactcaaatccatagtagaatttcaaaataaagc 108  Q
    ||||||||||||||||| ||||||||| ||||||| || |||||  ||||| |||||||||| |||||||||||| ||||||||||| |||||||| | |    
T  18304940 attgttgtcaaaatcccaacttaaatcctaaaatccagtattttgcgactttcttcaccttcaaacgactcaaattcatagtagaatctcaaaataga-c 18304842  T
Q  109 aaaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||| |||||||||||| || || |||||||||||    
T  18304841 aaaatccatcaattttgattgcga-tttacgatttc 18304807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 23528656 - 23528789
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||| ||||||||| ||||||  ||||||||  ||||| ||||| ||||||||||||||||||||||||||||   ||||| | |||    
T  23528656 attgttgtcaaaatcccaacttaaatcttaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaatcctaaaat-aggca 23528754  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||  ||| ||||||| || ||||||||||||||    
T  23528755 aaatctatcgattttgaatgcgattttacgatttc 23528789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 41032799 - 41032666
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||| |||||||||||||| |||  ||||||||  || || |||||||||||||||||||||||||||||||||||  ||||| | |||    
T  41032799 attgttgtcaaaatctcgacttaaatcgtagaattcaggattttgcgattttcttcaccttcaacgactcaaatccatagtagaattctaaaat-aggca 41032701  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||| | || |||||||| |||||    
T  41032700 aaatccatcgattttaattgcgattttacaatttc 41032666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 19010073 - 19009942
Alignment:
Q  12 tgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaa 111  Q
    |||||||||||||| |||||||||| ||||||  ||||||||  |||||  ||||||||||| |||| |||||||||||| ||||  ||||| |||||||    
T  19010073 tgttgtcaaaatccggacttaaatcctaaaattcaggattttgcgacttttttcaccttcaatgacttaaatccatagtaaaattctaaaat-aagcaaa 19009975  T
Q  112 attcatcaattttgactgtgattttacgatttc 144  Q
    || |||| ||||||| || ||||||||||||||    
T  19009974 atccatcgattttgattgcgattttacgatttc 19009942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 9327344 - 9327211
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||| ||||||| |||||||||| |||||| |||| ||||  ||||| || |||||||||||||||||||| |||||| |||  ||||||| | ||    
T  9327344 attgttgttaaaatcctgacttaaatcctaaaatttagggttttgcgactttctacaccttcaacgactcaaatctatagtaaaatcccaaaataga-ca 9327246  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| || ||||||||||||||    
T  9327245 aaatccatcgattttgattgcgattttacgatttc 9327211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 30619074 - 30619150
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatcc 85  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||  || || ||||||||||||||||||||||||    
T  30619074 tattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgattttcttcaccttcaacgactcaaatcc 30619150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 9352192 - 9352059
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||  ||||| |||||||||||| |||||||||| |||| ||| |  ||||||| | ||    
T  9352192 attgttgtcaaaatcccgacttaaatcctaaaatccagggttttgcgactttcttcaccttcaaagactcaaatctatagcagagtcccaaaataga-ca 9352094  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| | || ||||||| || ||||||| ||||||    
T  9352093 aaatccgtcgattttgattgcgattttatgatttc 9352059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 13100195 - 13100324
Alignment:
Q  14 ttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaat 113  Q
    ||||||||||||| ||||||||  ||||||| ||||||||  ||||| |||||| |||||||||||||||||||||||||||   ||||| | ||||||     
T  13100195 ttgtcaaaatcccaacttaaattctaaaatcgaggattttacgactttcttcacgttcaacgactcaaatccatagtagaatcctaaaat-aggcaaaaa 13100293  T
Q  114 tcatcaattttgactgtgattttacgatttc 144  Q
     |||| ||||||| || |||||||| |||||    
T  13100294 ccatcgattttgattgcgattttacaatttc 13100324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 14074499 - 14074405
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaata 104  Q
    |||||||||||||||||| |||||||| |||||| |||||||||  ||||| |||||  |||||||||||||||||| |||||||| | ||||||    
T  14074499 attgttgtcaaaatcccgtcttaaatcctaaaatgtaggattttgcgactttcttcatgttcaacgactcaaatccagagtagaatcttaaaata 14074405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 25146897 - 25146803
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaata 104  Q
    |||||||||||||||| |||||||||| ||||||  || |||||  ||||| |||||||||||||||||||||| |||||||||||  |||||||    
T  25146897 attgttgtcaaaatcctgacttaaatcctaaaattcagaattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaata 25146803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 9128970 - 9128836
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagc 108  Q
    ||||||||| |||||| ||||||||||| |||||  |||||| ||  ||||| |||||| || ||||||||||||  |||||||||| | |||||| | |    
T  9128970 tattgttgttaaaatcacgacttaaatcctaaaaattaggatcttgcgactttcttcacatttaacgactcaaatttatagtagaatcttaaaataga-c 9128872  T
Q  109 aaaattcatcaattttgactgtgattttacgatttc 144  Q
    |||||||||| ||||||| || ||||| ||||||||    
T  9128871 aaaattcatcgattttgattgcgatttgacgatttc 9128836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 12800711 - 12800629
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagta 91  Q
    ||||||||| |||||||| ||||||||| |||||| |||||||||  ||||| |||||| |||||||||||||||| ||||||    
T  12800711 tattgttgtgaaaatcccaacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatctatagta 12800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 34478899 - 34478833
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacga 76  Q
    |||||||| |||||||||||||||||| |||||| | ||||||| |||||| |||||||||||||||    
T  34478899 attgttgttaaaatcccgacttaaatcttaaaatttgggattttgtgactttcttcaccttcaacga 34478833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 18337650 - 18337567
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaa 94  Q
    ||||||||||||||||||||||| | | ||||||| ||||||||   ||||  ||||||||||||||||||||||||||| ||||    
T  18337650 attgttgtcaaaatcccgacttatacc-taaaatccaggattttgcaactttattcaccttcaacgactcaaatccatagcagaa 18337567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 16125580 - 16125452
Alignment:
Q  17 tcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgctt---caccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaat 113  Q
    ||||||||| |||||||||| ||||||  ||||||||  ||||| |||   |||||||||||||  |||||||||||| ||| | ||||| | |||||||    
T  16125580 tcaaaatcctgacttaaatcctaaaattcaggattttgcgactttctttttcaccttcaacgacctaaatccatagtaaaatcttaaaat-aggcaaaat 16125482  T
Q  114 tcatcaattttgactgtgattttacgattt 143  Q
     |||  ||||||| || |||||||||||||    
T  16125481 ccattgattttgattgcgattttacgattt 16125452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 17869873 - 17869746
Alignment:
Q  11 ttgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaa 110  Q
    ||||||||||||||| |||||||||| |||     ||||||||  ||||| |||||||||| |||||  ||||||| ||||||||   ||||| | ||||    
T  17869873 ttgttgtcaaaatcctgacttaaatcttaa-----aggattttgcgactttcttcaccttcgacgacctaaatccacagtagaatcctaaaat-aggcaa 17869780  T
Q  111 aattcatcaattttgactgtgattttacgatttc 144  Q
    ||||| || ||||||| ||  |||||||||||||    
T  17869779 aattcttcgattttgattgcaattttacgatttc 17869746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 27917578 - 27917496
Alignment:
Q  13 gttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    |||||||||||||||||||||||  | ||||||||||||||  || ||  || ||||||||| || ||||| ||||| |||||    
T  27917578 gttgtcaaaatcccgacttaaattctgaaatctaggattttgcgattttatttaccttcaacaacccaaattcatagcagaat 27917496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 6e-39; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 26053428 - 26053292
Alignment:
Q  7 agtattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaa 106  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||  ||||| |||||||||||| ||||||||| |||| ||||||  |||||| ||    
T  26053428 agtattgttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaat-aa 26053330  T
Q  107 gcaaaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||||| |||||||||||| ||| |||||||||||||    
T  26053329 gcaaaatccatcaattttgattgtcattttacgatttc 26053292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 26073481 - 26073345
Alignment:
Q  7 agtattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaa 106  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||  ||||| |||||||||||| ||||||||| |||| ||||||  |||||| ||    
T  26073481 agtattgttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaat-aa 26073383  T
Q  107 gcaaaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||||| |||||||||||| ||| |||||||||||||    
T  26073382 gcaaaatccatcaattttgattgtcattttacgatttc 26073345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 6943589 - 6943464
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||  ||||| ||||||||||||||||||||||| |||||||||| |||||||| | ||    
T  6943589 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatcgatagtagaatctcaaaataga-ca 6943491  T
Q  110 aaattcatcaattttgactgtgatttt 136  Q
    ||||||||| ||||||| || ||||||    
T  6943490 aaattcatcgattttgattgcgatttt 6943464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 27233406 - 27233273
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||||||| | |||||||||||| ||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||  ||||||| | ||    
T  27233406 attgttgtcaaactaccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttaaatccatagtagaatcccaaaataga-ca 27233308  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| || ||||||| ||||||    
T  27233307 aaatccatcgattttgattgcgattttatgatttc 27233273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 30912541 - 30912408
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||  ||||| ||||||||||||||||||||||||||| ||||||  |||||| | |||    
T  30912541 attgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccataatagaatcacaaaat-aggca 30912443  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||  ||||||| || ||||||||||||||    
T  30912442 aaatccatagattttgattgcgattttacgatttc 30912408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 17250056 - 17250190
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagc 108  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||||   |||| ||||||||||||||||| ||||||||| ||||||  |||||| | ||    
T  17250056 tattgttgttaaaatcccgacttaaatcctaaaatccaggattttgcaactttcttcaccttcaacgacttaaatccatactagaatcccaaaat-aggc 17250154  T
Q  109 aaaattcatcaattttgactgtgattttacgatttc 144  Q
    |||||||||  ||||||| || ||||||||||||||    
T  17250155 aaaattcattgattttgattgcgattttacgatttc 17250190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 19748333 - 19748466
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||| |||||||||||||||||||| || |||| ||||||||  || || ||||||||| || ||||||||||| ||||||||| | ||||| | |||    
T  19748333 attgttttcaaaatcccgacttaaatcttacaatccaggattttgagattttcttcacctttaatgactcaaatccgtagtagaatcttaaaat-aggca 19748431  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||||||| ||||||| |||||||||||||||||    
T  19748432 aaattcatcgattttgattgtgattttacgatttc 19748466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 15528239 - 15528106
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||  ||||| ||||||||| ||||||| |||| ||||||||||| | |||||| | ||    
T  15528239 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcacctttaacgacttaaattcatagtagaatcttaaaataga-ca 15528141  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| |||| || || ||||||||||||||    
T  15528140 aaatccatcgatttcgattgcgattttacgatttc 15528106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 7223519 - 7223645
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||| |||||| |||||||||  ||||| ||||||||       || ||||||||||||||||| |||||| |||||    
T  7223519 attgttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcacct-------cttaaatccatagtagaattccaaaat-aagca 7223610  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| || ||||||||||||||    
T  7223611 aaatccatcgattttgattgcgattttacgatttc 7223645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 2912373 - 2912245
Alignment:
Q  13 gttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaa 112  Q
    |||||||||||||||||||||||| |||||| |||||||||   |||| || || ||||||||| |||||| ||||||||||| | ||||| ||||||||    
T  2912373 gttgtcaaaatcccgacttaaatcttaaaatttaggattttgcaactttctccatcttcaacgattcaaat-catagtagaatcttaaaat-aagcaaaa 2912276  T
Q  113 ttcatcaattttgactgtgattttacgattt 143  Q
    |||||| ||||||| ||  ||||||||||||    
T  2912275 ttcatcgattttgattgcaattttacgattt 2912245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 17543869 - 17543736
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||| ||||||||||| ||||||  ||||||||  |||||  ||||| ||||||||||||||||||||||||||| | ||||| |||||    
T  17543869 attgttgtcaaaatctcgacttaaatcctaaaattcaggattttgcgacttttttcactttcaacgactcaaatccatagtagaatcttaaaat-aagca 17543771  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||  ||  ||||||| || |||||||| |||||    
T  17543770 aaatctatggattttgattgcgattttactatttc 17543736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 23897823 - 23897944
Alignment:
Q  22 atcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaattcatcaat 121  Q
    ||||||||||||||| ||||||  ||||||||  ||||| |||||| ||||||||||||||||||||||| ||||  ||||| | || |||| |||| ||    
T  23897823 atcccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccatagtaaaattctaaaat-aggcgaaatccatcgat 23897921  T
Q  122 tttgactgtgattttacgatttc 144  Q
    ||||| || ||||||||||||||    
T  23897922 tttgattgcgattttacgatttc 23897944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 7918511 - 7918429
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagta 91  Q
    |||||||||||||||||||||||||||  ||||||  ||||||||  |||||  |||||||||||||||| ||||||||||||    
T  7918511 tattgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttttttcaccttcaacgacttaaatccatagta 7918429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 10509148 - 10509023
Alignment:
Q  14 ttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaat 113  Q
    |||||||||||| |||||||||| ||||||  || | ||| |||||| |||||| ||||| |||||||||  ||||||||||  |||||| | |||||||    
T  10509148 ttgtcaaaatccagacttaaatcctaaaattcagaaatttgtgactttcttcacattcaatgactcaaatttatagtagaatcccaaaat-aggcaaaat 10509050  T
Q  114 tcatcaattttgactgtgattttacga 140  Q
    ||||| ||||||| |  ||||||||||    
T  10509049 tcatcgattttgattacgattttacga 10509023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 11327700 - 11327567
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||| | ||||||| | | ||||  |  || ||||| |||||| |||| ||||||||||||||||  |||||| | |||    
T  11327700 attgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaat-aggca 11327602  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||||||| ||||| | || ||||||||| ||||    
T  11327601 aaattcatcgattttaattgcgattttacgttttc 11327567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 18491166 - 18491081
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    |||| |||||||||||||||||||||| ||||||| || |||||    |||  ||||||||||||||||||||||||||| |||||    
T  18491166 attgctgtcaaaatcccgacttaaatcctaaaatccagaattttgcatctttattcaccttcaacgactcaaatccatagcagaat 18491081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 17103202 - 17103328
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||| ||||||  ||||||       ||||  ||| ||||||||||||||| |||||||||||  ||||||| | ||    
T  17103202 attgttgtcaaaatcccgacttaaatcttaaaattcaggatt-------ttgcgacactttcaacgactcaaatgcatagtagaatcccaaaataga-ca 17103293  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| |  ||||||||||||||    
T  17103294 aaatccatcgattttgattacgattttacgatttc 17103328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 22499006 - 22498881
Alignment:
Q  18 caaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaattcat 117  Q
    ||||||||| ||| ||||| |||| || |  |||||  ||||| ||||||||| |||||||||||||||||||| ||| |||||||| | |||||| |||    
T  22499006 caaaatcccaactaaaatcctaaattccacaattttgcgactttcttcaccttgaacgactcaaatccatagtacaatctcaaaataga-caaaatccat 22498908  T
Q  118 caattttgactgtgattttacgatttc 144  Q
    | ||||| | ||  |||||||||||||    
T  22498907 cgattttaattgcaattttacgatttc 22498881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 3574059 - 3573984
Alignment:
Q  12 tgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccat 87  Q
    |||| ||||||| |||||||||||  ||||||| || ||||   ||||| ||||||||||||||||||||||||||    
T  3574059 tgttttcaaaattccgacttaaattctaaaatccagaatttcgcgactttcttcaccttcaacgactcaaatccat 3573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 5422877 - 5422798
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatag 89  Q
    ||||||||||||||||||||||||||  ||||||  | ||||||   ||||  |||||||||||||||||||||| ||||    
T  5422877 attgttgtcaaaatcccgacttaaatactaaaattcatgattttgcaactttattcaccttcaacgactcaaatctatag 5422798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 10958316 - 10958239
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccat 87  Q
    ||||||||||||||| |||||||||||  |||||  ||||||||  ||||||  |||||||||| || ||||||||||    
T  10958316 attgttgtcaaaatcgcgacttaaatctcaaaattcaggattttgcgacttgactcaccttcaaggattcaaatccat 10958239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 33583855 - 33583774
Alignment:
Q  13 gttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaa 94  Q
    |||||||||||| |||||||| ||  |||||| ||||||||| |||||   | | |||||||||||||||||||||| ||||    
T  33583855 gttgtcaaaatcgcgacttaagtcccaaaatccaggatttttagactttaattagcttcaacgactcaaatccatagcagaa 33583774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 3573980 - 3573922
Alignment:
Q  131 gattttacgatttcatacaatatcgcaggattttaaagggttttgaagaattttatcca 189  Q
    ||||||| ||||||| |||| || ||| ||| |||||||||||||||||||||| ||||    
T  3573980 gattttaagatttcaaacaaaattgcatgatgttaaagggttttgaagaattttttcca 3573922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 21354748 - 21354873
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||| ||||||||| |||||||  ||| |||        ||| ||||||||||||| |||||||| |||||||  ||||||| | ||    
T  21354748 attgttgtcaaaatcccaacttaaatcctaaaatcctggacttt--------ctttaccttcaacgacttaaatccatggtagaatcccaaaataga-ca 21354838  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| ||||  |||| | || ||||||||||||||    
T  21354839 aaatccatcgttttttattgcgattttacgatttc 21354873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 8285843 - 8285776
Alignment:
Q  19 aaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatcca 86  Q
    |||||| |||||||| || ||||||| ||||||||  |||||| |  | |||||||||||||||||||    
T  8285843 aaaatcgcgacttaagtcctaaaatccaggattttgcgacttgatctagcttcaacgactcaaatcca 8285776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 2e-35; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 25539359 - 25539177
Alignment:
Q  6 cagtattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataa 105  Q
    ||||| |||||| |||||||||| ||||||| ||||||  | || |||   | || ||||||||||||||||| |||||||||| |||||   |||||||    
T  25539359 cagtactgttgttaaaatcccgatttaaatcctaaaattcaagaatttgcaattttcttcaccttcaacgacttaaatccataggagaatccgaaaataa 25539260  T
Q  106 agcaaaattcatcaattttgactgtgattttacgatttcatacaatatcgcaggattttaaagggttttgaagaattttatcca 189  Q
     ||||||| |||| |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||| |||||||| ||||    
T  25539259 -gcaaaatccatcgattttgactgcgatttaacgatttcatacaaaatcgcaggattttaaagggttttgtagaattttgtcca 25539177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 30432419 - 30432552
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||||||||||| || ||||||  ||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |||||||| | ||    
T  30432419 attgttgtcaaaatcctgatttaaattctaaaatctaggatttttcgactttcttcgccttcaacgactcaaatccatagtagaatctcaaaataga-ca 30432517  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| ||  |||||||||||||    
T  30432518 aaatccatcgattttgattgcaattttacgatttc 30432552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 31238106 - 31237973
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||| ||||||||||||||||   |||| |||||||||||||||||||||| ||||||||||| | ||||| | | |    
T  31238106 attgttgtcaaaatcccgacttaaatcctaaaatctaggattttgccactttcttcaccttcaacgactcaaattcatagtagaatcttaaaat-aggaa 31238008  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| || ||||||||||||||    
T  31238007 aaatccatcgattttgattgcgattttacgatttc 31237973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 1404783 - 1404916
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||  |||||| ||||||||| |||||| ||||||||||||||||| |||||||| |||||| | | |||  | |||    
T  1404783 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgtgactttcttcaccttcaacgacttaaatccattgtagaa-tcctaaactatgca 1404881  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| |||||||||||||||||    
T  1404882 aaatccatcgattttgattgtgattttacgatttc 1404916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 19491855 - 19492029
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgta--aaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaag 107  Q
    ||||||||||||||| ||| ||||||| ||  ||||||||||||||  ||||| ||||| ||| |||||||||||||||||| |||||  |||||||  |    
T  19491855 attgttgtcaaaatctcgaattaaatcctataaaatctaggattttgcgactttcttcatcttaaacgactcaaatccatagcagaatc-caaaatag-g 19491952  T
Q  108 caaaattcatcaattttgactgtgattttacgatttcatacaatatcgcaggattttaaagggttttgaagaattttatcca 189  Q
     ||||| |||| ||||||| || |||||||     |||||||| ||||||||||||||||||||||||||||||||||||||    
T  19491953 taaaatccatcgattttgattgcgatttta-----tcatacaaaatcgcaggattttaaagggttttgaagaattttatcca 19492029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 36429848 - 36429981
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||| ||||||||| || |||||||||||||  ||||| |||||||||||||||||||| | ||||| ||||| ||||||| | |||    
T  36429848 attgttgtcaaaatcccaacttaaatcctataatctaggattttgcgactttcttcaccttcaacgactcaagttcataggagaatctcaaaat-aggca 36429946  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| || |||| |||||||||    
T  36429947 aaatccatcgattttgattgcgattgtacgatttc 36429981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 23863450 - 23863321
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||  ||||||| || |||||  ||||| |||||| |||||||||| |||||||||||||||| ||||||| | |||    
T  23863450 attgttgtcaaaatcccgacttaaattctaaaatcgagaattttgcgactttcttcactttcaacgactgaaatccatagtagaatctcaaaat-aggca 23863352  T
Q  110 aaattcatcaattttgactgtgattttacga 140  Q
    |||| |||| ||||||  || ||||||||||    
T  23863351 aaatccatcgattttggttgcgattttacga 23863321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 1690891 - 1690797
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaata 104  Q
    |||||||||||||  |||||||||||| |||||| ||||||||| |||||| |||||||||| |||||||| |||||||||| |||  |||||||    
T  1690891 attgttgtcaaaactccgacttaaatcttaaaatttaggattttgtgactttcttcaccttcgacgactcagatccatagtaaaatcccaaaata 1690797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 31578007 - 31578136
Alignment:
Q  12 tgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaa 111  Q
    ||||||||||||||||||||||||  |||||| || ||||||  || || ||||||||||||||| | |||||| |||||||||   ||||| |||||||    
T  31578007 tgttgtcaaaatcccgacttaaatgttaaaatttaagattttgcgattttcttcaccttcaacgatttaaatcc-tagtagaatcctaaaat-aagcaaa 31578104  T
Q  112 attcatcaattttgactgtgattttacgattt 143  Q
    || |||||||||||| ||  ||||||||||||    
T  31578105 atccatcaattttgattgcaattttacgattt 31578136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 15588978 - 15588843
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||| ||||||||||||||||||| || ||||||  ||||||||  | ||| ||||||||||||| |||||||| ||||||||||| |||||||| | ||    
T  15588978 attgctgtcaaaatcccgacttaa-tcttaaaattcaggattttgcgtctttcttcaccttcaacaactcaaatacatagtagaatctcaaaataga-ca 15588881  T
Q  110 aaattcatcaattttgactgtgattttacgatttcata 147  Q
    ||||  |||  |||| | || |||||||||||||||||    
T  15588880 aaatcaatcgttttttattgcgattttacgatttcata 15588843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 20063714 - 20063847
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||| | ||||||| | | ||||  |  || ||||| |||||| |||| ||||||||||||||||  |||||| | |||    
T  20063714 attgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaat-aggca 20063812  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||||||| ||||| | || ||||||||| ||||    
T  20063813 aaattcatcgattttaattgcgattttacgttttc 20063847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 35566082 - 35565950
Alignment:
Q  11 ttgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaa 110  Q
    |||||||||||||||| |||||||||  |||||  ||||||||  ||||| |||||  ||||| ||||||||||||| |||||||  |||||| | ||||    
T  35566082 ttgttgtcaaaatcccaacttaaatcacaaaattcaggattttgcgactttcttcatattcaatgactcaaatccatggtagaatcccaaaat-aggcaa 35565984  T
Q  111 aattcatcaattttgactgtgattttacgatttc 144  Q
    ||| |||| ||||||| ||   ||||||||||||    
T  35565983 aatccatcgattttgattgcagttttacgatttc 35565950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 16766709 - 16766795
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    |||||||||||||||   |||||||||| |||||| |||||||||  || ||  |||||||||||||| |||||||||||| |||||    
T  16766709 tattgttgtcaaaattttgacttaaatcttaaaatttaggattttacgattttattcaccttcaacgaatcaaatccatagcagaat 16766795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 5395777 - 5395683
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaata 104  Q
    ||||||||||||||   ||| |||||| |||||| |||||||||  |||||  |||| ||| || ||||||||||||||| ||||| ||||||||    
T  5395777 attgttgtcaaaattttgacctaaatcataaaatataggattttgcgactttattcatcttaaatgactcaaatccatagcagaatctcaaaata 5395683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 29660892 - 29660936
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaatcgtaaaatctaggatttt 53  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||    
T  29660892 tattgttgtcaaaaatccgacttaaatcctaaaatctaggatttt 29660936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 31023255 - 31023308
Alignment:
Q  42 atctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    ||||||||||||  |||||  ||||| ||||||||||||||| |||||||||||    
T  31023255 atctaggattttgcgactttattcactttcaacgactcaaattcatagtagaat 31023308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 34841584 - 34841641
Alignment:
Q  38 taaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    |||||| ||||||| |  |||||  ||||||||||||||||||||||||||| |||||    
T  34841584 taaaatttaggattctgcgactttattcaccttcaacgactcaaatccataggagaat 34841641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 27406852 - 27406884
Alignment:
Q  152 atcgcaggattttaaagggttttgaagaatttt 184  Q
    |||||| ||||||||||||||||||||||||||    
T  27406852 atcgcatgattttaaagggttttgaagaatttt 27406884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 15627659 - 15627698
Alignment:
Q  14 ttgtcaaaatcccgacttaaatcgtaaaatctaggatttt 53  Q
    ||||||||||||||||||||||| |||||| || ||||||    
T  15627659 ttgtcaaaatcccgacttaaatcctaaaatttatgatttt 15627698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 19245153 - 19245196
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggatttt 53  Q
    ||||||||||||||||||||||||||  ||||||  ||||||||    
T  19245153 attgttgtcaaaatcccgacttaaattttaaaattcaggatttt 19245196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 5922049 - 5922182
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| |||||| ||||||||||||||||| | ||||||||||||||  ||||||| | ||    
T  5922049 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttatatccatagtagaatcccaaaataga-ca 5922147  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| || |||||| |||||||    
T  5922148 aaatccatcgattttgattgcgattttgcgatttc 5922182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 17646991 - 17647126
Alignment:
Q  8 gtattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaag 107  Q
    |||||||||||||||| |||||||||||| ||||||  ||||||||  ||||| |||||||||||||||||||||| |||||||||||  |||||| | |    
T  17646991 gtattgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaat-agg 17647089  T
Q  108 caaaattcatcaattttgactgtgattttacgatttc 144  Q
     |||||||||| ||||||| ||| |||| ||||||||    
T  17647090 aaaaattcatcgattttgattgttatttaacgatttc 17647126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 45403029 - 45403160
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||| ||||||||||  ||||||| | ||||||  ||||| ||| ||||||||||||| |||||||||| ||||| ||||||| |||||    
T  45403029 attgttgtcaaaatcgcgacttaaattctaaaatccaagattttgcgactttcttgaccttcaacgacttaaatccatagaagaatctcaaaat-aagca 45403127  T
Q  110 aaattcatcaattttgactgtgattttacgatt 142  Q
    |||| |||| ||||||| || ||||||||||||    
T  45403128 aaatccatcgattttgattgcgattttacgatt 45403160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 19704583 - 19704451
Alignment:
Q  12 tgttgtcaaaatcccgacttaaatcgtaaaat-ctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaa 110  Q
    ||||||||||||||| ||||||||| |||||| | ||| ||||  ||||| ||||||||||||||||||||||||||||||||||| || ||| | ||||    
T  19704583 tgttgtcaaaatcccaacttaaatcttaaaattcaaggtttttgcgactttcttcaccttcaacgactcaaatccatagtagaattccataat-aggcaa 19704485  T
Q  111 aattcatcaattttgactgtgattttacgatttc 144  Q
    ||| |||| ||||||| ||  |||||||||||||    
T  19704484 aatccatcgattttgattgcaattttacgatttc 19704451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 15294672 - 15294803
Alignment:
Q  12 tgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaa 111  Q
    |||||| |||||||||||||||||| ||||||  ||||||||  |||||  |||||||||||||||||||||| ||||||||||  |||||| | |||||    
T  15294672 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaat-aggcaaa 15294770  T
Q  112 attcatcaattttgactgtgattttacgatttc 144  Q
    || |||| ||||||| || |||||||| |||||    
T  15294771 atccatcgattttgattgcgattttacaatttc 15294803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 15475041 - 15475172
Alignment:
Q  12 tgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaa 111  Q
    |||||| |||||||||||||||||| ||||||  ||||||||  |||||  |||||||||||||||||||||| ||||||||||  |||||| | |||||    
T  15475041 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaat-aggcaaa 15475139  T
Q  112 attcatcaattttgactgtgattttacgatttc 144  Q
    || |||| ||||||| || |||||||| |||||    
T  15475140 atccatcgattttgattgcgattttacaatttc 15475172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 3094378 - 3094250
Alignment:
Q  14 ttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaat 113  Q
    ||||||||||  ||||||||||| ||||||  ||||||||   |||| ||||||||||||||||||||||||||||||||||   ||||| | |||||||    
T  3094378 ttgtcaaaatttcgacttaaatcttaaaattcaggattttgctactttcttcaccttcaacgactcaaatccatagtagaatcctaaaat-aggcaaaat 3094280  T
Q  114 tcatcaattttgactgtgattttacgattt 143  Q
     |||| ||||||| || |||||||||||||    
T  3094279 ccatcgattttgattgcgattttacgattt 3094250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 11879600 - 11879733
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||||||||| | |||||||||| ||||||  ||||||||   |||| |||||| |||||||||||||||| ||||||||||   ||||| | | |    
T  11879600 attgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaat-aggaa 11879698  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||||||| ||||||| || ||||||||||||||    
T  11879699 aaattcatcgattttgattgcgattttacgatttc 11879733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 11897016 - 11897149
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||||||||| | |||||||||| ||||||  ||||||||   |||| |||||| |||||||||||||||| ||||||||||   ||||| | | |    
T  11897016 attgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaat-aggaa 11897114  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||||||| ||||||| || ||||||||||||||    
T  11897115 aaattcatcgattttgattgcgattttacgatttc 11897149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 22910319 - 22910198
Alignment:
Q  22 atcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaattcatcaat 121  Q
    ||||||||||||||| |||||| |||||||||  ||||| |||||| |||||||||||||||| |||||||||| | ||||| | ||||||| |||  ||    
T  22910319 atcccgacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatctatagtagaatcttaaaat-aggcaaaatccattgat 22910221  T
Q  122 tttgactgtgattttacgatttc 144  Q
    ||||| || ||||||| ||||||    
T  22910220 tttgattgcgattttaagatttc 22910198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 29384444 - 29384313
Alignment:
Q  11 ttgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaa 110  Q
    ||||||||||||||| |  ||||||| ||||||||  ||||||  ||||| |||||||||||||||||||||||||||||| || | |||||  | ||||    
T  29384444 ttgttgtcaaaatccaggtttaaatcctaaaatcttagattttgcgactttcttcaccttcaacgactcaaatccatagtataa-tccaaaaataggcaa 29384346  T
Q  111 aattcatcaattttgactgtgattttacgatttc 144  Q
    |||||||| | ||||| || ||||||||||||||    
T  29384345 aattcatcga-tttgattgcgattttacgatttc 29384313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 477176 - 477101
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatcc 85  Q
    |||||||||||||||| |||||||||| ||||||| |||||||| |||||| |||||||||||| |||| ||||||    
T  477176 attgttgtcaaaatcctgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaatgacttaaatcc 477101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 6810868 - 6810957
Alignment:
Q  56 gacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaattcatcaattttgactgtgattttacgatttcata 147  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||| | |||||| ||||| ||||||| |  |||||||||||||||||    
T  6810868 gactttcttcaccttcaacgactcaaatccatagtagaattttaaaat-aggcaaaa-tcatcgattttgattacgattttacgatttcata 6810957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 31424167 - 31424296
Alignment:
Q  14 ttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaat 113  Q
    |||||||||||| |||||||||  ||||||  ||||||||  ||||| |||| | ||||||||||||||||||||| |||||  |||||| | |||||||    
T  31424167 ttgtcaaaatcctgacttaaattctaaaattcaggattttacgactttcttccctttcaacgactcaaatccatagaagaatcccaaaat-aggcaaaat 31424265  T
Q  114 tcatcaattttgactgtgattttacgatttc 144  Q
     |||  ||||||| || ||||||||||||||    
T  31424266 ccattgattttgattgcgattttacgatttc 31424296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 27836593 - 27836478
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||||||||| |  ||||| ||| ||||||  ||||||||  |  ||  |||||||||||| ||| |||||||||||||||||  ||||| |||||    
T  27836593 attgttgtcaaaattcaaacttagatcctaaaattcaggattttgcggttttattcaccttcaacaactgaaatccatagtagaattctaaaat-aagca 27836495  T
Q  110 aaattcatcaattttga 126  Q
    |||||||||||||||||    
T  27836494 aaattcatcaattttga 27836478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 15761568 - 15761489
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatag 89  Q
    ||||||||||||||| ||||||||||| |||| || |||||||| ||| ||  || |||||||||||||||||| |||||    
T  15761568 attgttgtcaaaatctcgacttaaatcctaaactccaggattttgtgagtttatttaccttcaacgactcaaattcatag 15761489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 23142227 - 23142308
Alignment:
Q  62 cttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||| ||||||||||| ||||||||||||||||   ||||| | |||||||||||| ||||||| || ||||||||||||||    
T  23142227 cttcaacttcaacgactgaaatccatagtagaatcctaaaat-aggcaaaattcatcgattttgattgcgattttacgatttc 23142308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 6292467 - 6292356
Alignment:
Q  14 ttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaat 113  Q
    |||| ||||| |||||||||||| |||||| || |||||| ||||||  |||| ||| ||||||||||| |||||||| ||||  ||||| ||| |||||    
T  6292467 ttgttaaaataccgacttaaatcttaaaatttaagattttgtgacttttttcatctttaacgactcaaacccatagtataattctaaaat-aagaaaaat 6292369  T
Q  114 tcatcaattttga 126  Q
    ||| | |||||||    
T  6292368 tcaacgattttga 6292356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 24056697 - 24056618
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatag 89  Q
    |||||| ||||||||  |||||||||| ||||||| ||||||||  |||||  ||||| || ||||||||||||||||||    
T  24056697 attgttatcaaaatcttgacttaaatcctaaaatccaggattttgcgactttattcacatttaacgactcaaatccatag 24056618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 17788435 - 17788392
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggatttt 53  Q
    ||||||||||||||| | ||||||||  ||||||||||||||||    
T  17788435 attgttgtcaaaatcgcaacttaaattttaaaatctaggatttt 17788392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 23136353 - 23136392
Alignment:
Q  14 ttgtcaaaatcccgacttaaatcgtaaaatctaggatttt 53  Q
    ||||||||||||||||||||||| ||||||  ||||||||    
T  23136353 ttgtcaaaatcccgacttaaatcctaaaattcaggatttt 23136392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 5e-30; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 5715290 - 5715422
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||  |||||  | |||||||||| ||| |||| |||||||||||| |||||| |||||    
T  5715290 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactt-ttacaccttcaacaacttaaattcatagtagaattccaaaat-aagca 5715387  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||||||| ||||||| |||||||||||||||||    
T  5715388 aaattcatcgattttgattgtgattttacgatttc 5715422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 26281438 - 26281324
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||||||||| |||||||||||| ||||||  ||||||||  ||||| |||||||||||||||||||||||||| |||||||| |||||| |||||    
T  26281438 attgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaattccaaaat-aagca 26281340  T
Q  110 aaattcatcaattttg 125  Q
    |||| |||| ||||||    
T  26281339 aaatccatcgattttg 26281324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 9685373 - 9685240
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||| ||||||| ||| |||||| |||||||||  |||||  |||||||||||||||||||||||||| ||||||||||||||| | ||    
T  9685373 attgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaataga-ca 9685275  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||| | || ||||||| ||||||    
T  9685274 aaatccatcgattttaattgcgattttatgatttc 9685240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 24725606 - 24725473
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||||||||||| |||||||||| ||||||| | ||||||  ||||| ||||||||||||| ||||||||||||||||||||  |||||| | |||    
T  24725606 attgttgtcaaaatccagacttaaatcctaaaatccaagattttacgactttcttcaccttcaacaactcaaatccatagtagaatcgcaaaat-aggca 24725508  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||||||||||| |  ||||| ||||||||    
T  24725507 aaatccatcaattttgattacgatttgacgatttc 24725473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 11326383 - 11326519
Alignment:
Q  7 agtattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaa 106  Q
    |||||||||||||||||||| ||||||||| |||||| |||||||||  ||||| ||||||||||| ||||| |||||||||||||||| | ||||| |     
T  11326383 agtattgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcagcgactaaaatccatagtagaatcttaaaat-ag 11326481  T
Q  107 gcaaaattcatcaattttgactgtgattttacgatttc 144  Q
    |||||||  ||| ||||||| || |||||||| |||||    
T  11326482 gcaaaatctatcgattttgattgcgattttacaatttc 11326519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 24990200 - 24990067
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||||||||| ||||||||||||  ||||| ||||||||| |||||| ||| |||| |||||||||||||||||||||||||   ||||| | |||    
T  24990200 attgttgtcaaaattccgacttaaatccaaaaatttaggattttgtgactttctttacctccaacgactcaaatccatagtagaatcctaaaat-aggca 24990102  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| ||  |||||||||||||    
T  24990101 aaatccatcgattttgattgcaattttacgatttc 24990067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 39182260 - 39182392
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||| |||||||| |||||||||| ||||||||||||||||  ||||| ||||||||||||||||| ||||||||||||||||  |||||| | |||    
T  39182260 attgttgacaaaatcctgacttaaatcctaaaatctaggattttgcgactt-cttcaccttcaacgactgaaatccatagtagaatcccaaaat-aggca 39182357  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||  || |||||||| |||||    
T  39182358 aaatccatcgattttggttgcgattttacaatttc 39182392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 8346660 - 8346529
Alignment:
Q  12 tgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaa 111  Q
    |||||||||||||| ||| |||||  |||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||||  |||||| | | |||    
T  8346660 tgttgtcaaaatcctgacctaaatattaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaat-aggaaaa 8346562  T
Q  112 attcatcaattttgactgtgattttacgatttc 144  Q
    || |||| ||||| | || ||||||||||||||    
T  8346561 atccatcgattttaattgcgattttacgatttc 8346529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 22687793 - 22687654
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||| ||||||  |||| |||  ||||| ||||| ||||||| |||||||||||| | |||||  |||||| | |||    
T  22687793 attgttgtcaaaatcccgacttaaatcctaaaattcaggaatttgcgactttcttcaacttcaacaactcaaatccatcgcagaatcccaaaat-aggca 22687695  T
Q  110 aaattcatcaattttgactgtgattttacgatttcatacaa 150  Q
    |||| |||| ||||||| || |||||||||||||| |||||    
T  22687694 aaatccatcgattttgattgcgattttacgatttcttacaa 22687654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 4247356 - 4247489
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||| | ||||||| ||||||  |||||||| | |||| |||||| |||||| ||| ||||||||||||||||  |||||| | |||    
T  4247356 attgttgtcaaaatcccaatttaaatcctaaaattcaggattttgtaactttcttcactttcaacaacttaaatccatagtagaatcccaaaat-aggca 4247454  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||||||| ||||||| || ||||||| ||||||    
T  4247455 aaattcatcgattttgattgcgattttatgatttc 4247489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 7730471 - 7730339
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||||||||||| |||||||||| ||||||| ||| ||||  ||||| ||||||||| ||| ||||||||||| ||||||||| |||||| | | |    
T  7730471 attgttgtcaaaatcctgacttaaatcctaaaatccagg-ttttgcgactttcttcacctttaacaactcaaatccacagtagaattccaaaat-aggaa 7730374  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| || ||||||||||||||    
T  7730373 aaatccatcgattttgattgagattttacgatttc 7730339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 8343929 - 8343796
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||||||||||  | | |||||| |||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||  |||||| | | |    
T  8343929 attgttgtcaaaatcttggcctaaatcctaaaatcctggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaat-atgaa 8343831  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||||||||| | || ||||||||||||||    
T  8343830 aaatccatcaattttaattgcgattttacgatttc 8343796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 8571250 - 8571328
Alignment:
Q  17 tcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    |||||||||||||||||||| ||||||| ||||||||  ||||| ||||||||| ||||||||||||||||||||||||    
T  8571250 tcaaaatcccgacttaaatcataaaatccaggattttgcgactttcttcacctttaacgactcaaatccatagtagaat 8571328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 14055251 - 14055380
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||| |||||||| ||||| ||| ||||||| | ||||||  ||||| ||||||||||||||||||||||| |||||||||||  ||||| | |||    
T  14055251 attgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaat-aggca 14055349  T
Q  110 aaattcatcaattttgactgtgattttacga 140  Q
    |||| |||  ||||||| || ||||||||||    
T  14055350 aaatccatagattttgattgcgattttacga 14055380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 14365279 - 14365408
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||| |||||||| ||||| ||| ||||||| | ||||||  ||||| ||||||||||||||||||||||| |||||||||||  ||||| | |||    
T  14365279 attgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaat-aggca 14365377  T
Q  110 aaattcatcaattttgactgtgattttacga 140  Q
    |||| |||  ||||||| || ||||||||||    
T  14365378 aaatccatagattttgattgcgattttacga 14365408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 27221418 - 27221551
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||| |||||||| ||||||||  ||||||  ||||||||  ||||| ||||| |||||||||||||||| ||||||||||| | |||||   |||    
T  27221418 attgttgttaaaatcccaacttaaattctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatacatagtagaatcttaaaat-tggca 27221516  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| || ||||||||||||||    
T  27221517 aaatccatcgattttgattgcgattttacgatttc 27221551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 5058530 - 5058662
Alignment:
Q  11 ttgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaa 110  Q
    |||||||||||||||||||||||||| ||||||  || |||||  || || ||||||||||||||||  |||||||||||||||| | ||||| | ||||    
T  5058530 ttgttgtcaaaatcccgacttaaatcctaaaattcagaattttgcgattttcttcaccttcaacgacctaaatccatagtagaatcttaaaat-aggcaa 5058628  T
Q  111 aattcatcaattttgactgtgattttacgatttc 144  Q
    ||| |  | ||||||| || ||||||||||||||    
T  5058629 aatcctacgattttgattgcgattttacgatttc 5058662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 11324988 - 11325111
Alignment:
Q  19 aaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaattcatc 118  Q
    |||||||||||||||||| ||||||  | ||||||  || || ||||||||||||||||||||||||||| |||||||  ||||| | |||||||||||     
T  11324988 aaaatcccgacttaaatcctaaaattcatgattttgggattttcttcaccttcaacgactcaaatccataatagaattctaaaat-aggcaaaattcat- 11325085  T
Q  119 aattttgactgtgattttacgatttc 144  Q
    |||||||| || || |||||||||||    
T  11325086 aattttgattgcgaatttacgatttc 11325111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 17811385 - 17811480
Alignment:
Q  48 gattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaattcatcaattttgactgtgattttacgatttc 144  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||||||| |||||| | ||||||  ||| ||||||| || ||||||||||||||    
T  17811385 gattttgtgacttttttcaccttcaacgactcaaatccatagtagaattttaaaataga-caaaatcgatcgattttgattgcgattttacgatttc 17811480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 44944979 - 44944841
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgct----tcaccttcaacgactcaaatccatagtagaatttcaaaata 104  Q
    |||||||||||||||||||||||||||| ||||||  ||||||||  ||||| ||    ||||||||||||| ||||||||||||||||||   |||||     
T  44944979 tattgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcactcaccttcaacgattcaaatccatagtagaatcctaaaat- 44944881  T
Q  105 aagcaaaattcatcaattttgactgtgattttacgatttc 144  Q
    |  |||||| |||| ||||||| || |||||||| |||||    
T  44944880 agtcaaaatccatcgattttgattgggattttactatttc 44944841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 8330174 - 8330042
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||||||||||| ||| |||||  ||||||  | ||||||  ||||| ||||||||||||||| ||||||||||||||||||  |||||| | | |    
T  8330174 attgttgtcaaaatcctgacctaaattctaaaattcatgattttgcgactttcttcaccttcaacgattcaaatccatagtagaatcccaaaat-aggaa 8330076  T
Q  110 aaattcatcaattttgactgtgattttacgattt 143  Q
    ||||||||  ||||| | || |||||||||||||    
T  8330075 aaattcattgattttaattgcgattttacgattt 8330042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 21846555 - 21846469
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatt 96  Q
    |||||||||||||||||||||||||||  ||||||  ||||||||  |||||  ||||| |||||||||||| |||||||||||||||    
T  21846555 tattgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactt-tttcacattcaacgactcacatccatagtagaatt 21846469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 27510020 - 27509939
Alignment:
Q  62 cttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaattcatcaattttgactgtgattttacgatttc 144  Q
    |||||| | |||||| ||||||| |||||||||||| ||||||  |||||||||||||||||||| || ||||||||||||||    
T  27510020 cttcacatccaacgattcaaatctatagtagaatttaaaaatag-gcaaaattcatcaattttgattgcgattttacgatttc 27509939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 30294175 - 30294266
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaata 104  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||| ||| ||  ||||||||   |||||||||||||||| | ||| ||||||||    
T  30294175 attgttgtcaaaatcccaacttaaatcctaaaatccaggattttgtgattttattcacctt---cgactcaaatccatagcaaaatctcaaaata 30294266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 8630087 - 8630002
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    ||||||||||||||| |||||||| ||  |||||||||||||||   ||||   | | ||||||||||||||||||||||||||||    
T  8630087 attgttgtcaaaatcgcgacttaagtcccaaaatctaggattttgcaactttacttaacttcaacgactcaaatccatagtagaat 8630002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 1977707 - 1977785
Alignment:
Q  65 caccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaattcatcaattttgactgtgattttacgatttc 144  Q
    |||||||||||||||||||||||||||||||   ||||| | ||||||||| || ||||||| || ||||||| ||||||    
T  1977707 caccttcaacgactcaaatccatagtagaatcctaaaat-atgcaaaattcgtcgattttgattgcgattttaggatttc 1977785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 21157761 - 21157714
Alignment:
Q  142 ttcatacaatatcgcaggattttaaagggttttgaagaattttatcca 189  Q
    ||||||||| ||||||| |||||||||| |||||||||||||| ||||    
T  21157761 ttcatacaaaatcgcagaattttaaaggattttgaagaattttgtcca 21157714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 6916785 - 6916829
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaatcgtaaaatctaggatttt 53  Q
    |||||||||||||||||||| ||||||| | |||| |||||||||    
T  6916785 tattgttgtcaaaatcccgatttaaatcttgaaatttaggatttt 6916829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 4574475 - 4574562
Alignment:
Q  14 ttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaa 101  Q
    |||| ||||||  |||||||||| ||||||| || |||||  |||||   ||||||||||||| |||||| ||| | |||||||||||    
T  4574475 ttgtgaaaatcatgacttaaatcctaaaatccagaattttgcgactttactcaccttcaacgattcaaattcattgcagaatttcaaa 4574562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 21846375 - 21846340
Alignment:
Q  109 aaaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||| |||||||||||| |||||||||||||||||    
T  21846375 aaaatccatcaattttgattgtgattttacgatttc 21846340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 5e-30; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 18051659 - 18051526
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||| |||||| |||||||||  ||||| ||||| ||||||||||||||||| |||||||||||  ||||| | |||    
T  18051659 attgttgtcaaaatcccgacttaaatcctaaaatataggattttgcgactttcttcaacttcaacgactcaaatctatagtagaattctaaaat-aggca 18051561  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| || |||| |||||||||    
T  18051560 aaatccatcgattttgattgcgattgtacgatttc 18051526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 21059284 - 21059152
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||  ||||| |||||| ||||||||||||||||||| |||||||  | |||| | |||    
T  21059284 attgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcactttcaacgactcaaatccat-gtagaatccctaaat-aggca 21059187  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||||||| ||||||| || ||||||||||||||    
T  21059186 aaattcatcgattttgattgcgattttacgatttc 21059152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 43234867 - 43235001
Alignment:
Q  9 tattgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagc 108  Q
    |||||||||||||||||| ||||||||| ||||||  ||||||||  ||||| ||||||||||||||||| ||||||||||||||||   ||||| | |     
T  43234867 tattgttgtcaaaatcccaacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgacttaaatccatagtagaatcctaaaat-agga 43234965  T
Q  109 aaaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||| |||| ||||||| |||||||||||||||||    
T  43234966 aaaatccatcgattttgattgtgattttacgatttc 43235001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 19578942 - 19579075
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||||||||| || ||||||||| ||||||| ||||||||  || || ||||||||||||||||| ||||||||||||||||  |||||| |||||    
T  19578942 attgttgtcaaaattccaacttaaatcataaaatccaggattttgcgattttcttcaccttcaacgacttaaatccatagtagaatcccaaaat-aagca 19579040  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| || || |||||||||||    
T  19579041 aaatccatcgattttgattgcgactttacgatttc 19579075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 23172560 - 23172454
Alignment:
Q  11 ttgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaa 110  Q
    |||||||||||||||||||||||||| |||||| |||||||||  ||||| ||||| ||||||||||| ||||||||||||||||  ||||||| | |||    
T  23172560 ttgttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcatcttcaacgacttaaatccatagtagaatcccaaaataga-caa 23172462  T
Q  111 aattcatc 118  Q
    ||||||||    
T  23172461 aattcatc 23172454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 27340307 - 27340189
Alignment:
Q  18 caaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaattcat 117  Q
    ||||||||||||||||||| |||||| || ||||||  ||||| ||||| ||||||||||||||||| |||||||||| | ||||| | |||||||||||    
T  27340307 caaaatcccgacttaaatcataaaatttatgattttgcgactttcttcatcttcaacgactcaaatctatagtagaatcttaaaat-aggcaaaattcat 27340209  T
Q  118 caattttgactgtgatttta 137  Q
    | ||||||| || |||||||    
T  27340208 cgattttgattgagatttta 27340189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 22645848 - 22645715
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||| ||||||| || |||||  ||||| ||||||||||||||| | |||||||||||| |||  |||||| ||| |    
T  22645848 attgttgtcaaaatcccgacttaaatcctaaaatccagtattttgcgactttcttcaccttcaacgatttaaatccatagtaaaatcccaaaat-aagta 22645750  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    || | |||| ||||||| || |||||||| |||||    
T  22645749 aattccatctattttgattgcgattttacaatttc 22645715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 38158383 - 38158250
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||||||||| |||||||||||| ||||||||||||||||  ||||| ||| || |||||| ||||||||||| ||||||||  ||||||| | ||    
T  38158383 attgttgtcaaaattccgacttaaatcctaaaatctaggattttgcgactttcttgactttcaacaactcaaatccagagtagaatcccaaaataga-ca 38158285  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||  ||||||  ||| |||||||||||||    
T  38158284 aaatccattgattttggttgttattttacgatttc 38158250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 18843716 - 18843848
Alignment:
Q  11 ttgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaa 110  Q
    ||||||| ||||| |||||||||||| || |||  ||||||||  ||||| |||||||||||||||||||||||||| |||||||  ||||||| | |||    
T  18843716 ttgttgttaaaattccgacttaaatcctataattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaatcccaaaataga-caa 18843814  T
Q  111 aattcatcaattttgactgtgattttacgatttc 144  Q
    |||||||| ||||||| ||  ||| |||||||||    
T  18843815 aattcatcgattttgattgcaattatacgatttc 18843848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 20923718 - 20923803
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaat 95  Q
    ||||||||||||||||||||||||||| ||||||| || |||||  ||||| ||||||||||||||||  ||||||||||||||||    
T  20923718 attgttgtcaaaatcccgacttaaatcctaaaatccagaattttgcgactttcttcaccttcaacgacctaaatccatagtagaat 20923803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 19042516 - 19042444
Alignment:
Q  12 tgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatc 84  Q
    ||||||||||||||| ||||||||  |||||| || |||||| |||||| |||||||||||||||||||||||    
T  19042516 tgttgtcaaaatcccaacttaaattctaaaatttaagattttgtgactttcttcaccttcaacgactcaaatc 19042444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 41688782 - 41688661
Alignment:
Q  21 aatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaattcatcaa 120  Q
    |||||| ||||||||| |||||| | |||||||   | || ||||||||||||||||| ||||  |||||| ||||  ||||||| |||||||||||| |    
T  41688782 aatcccaacttaaatcctaaaat-tcggattttgcaattttcttcaccttcaacgacttaaatttatagtaaaattctaaaataa-gcaaaattcatcga 41688685  T
Q  121 ttttgactgtgattttacgatttc 144  Q
    |||||| || ||||||||||||||    
T  41688684 ttttgattgcgattttacgatttc 41688661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 20320995 - 20321074
Alignment:
Q  62 cttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaattcatcaattttgactgtgattttacgatt 142  Q
    |||||||||||| |||| |||||||||||| |||| ||||||| |  |||||||||||| ||||| || ||||||||||||    
T  20320995 cttcaccttcaatgactaaaatccatagtaaaattccaaaataga-taaaattcatcaactttgattgcgattttacgatt 20321074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 26021408 - 26021453
Alignment:
Q  144 catacaatatcgcaggattttaaagggttttgaagaattttatcca 189  Q
    ||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  26021408 catacaaaatcgcaggattttaaagggttttgaaggattttgtcca 26021453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 43005940 - 43005898
Alignment:
Q  142 ttcatacaatatcgcaggattttaaagggttttgaagaatttt 184  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||    
T  43005940 ttcatacaaaatcgcaggatttttaagggttttgaaggatttt 43005898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 13342115 - 13342039
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccat 87  Q
    ||||||||||||||| ||| |||||||| |||||| |||| ||||||||||   ||||||||| |||  |||||||||    
T  13342115 attgttgtcaaaatcgcgatttaaatcgcaaaatccagga-tttttgactttactcaccttcatcgatccaaatccat 13342039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 20320926 - 20320990
Alignment:
Q  12 tgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacga 76  Q
    ||||||||||||||| || |||||| |||||| || ||||||   |||| |||||||||||||||    
T  20320926 tgttgtcaaaatcccaacctaaatcctaaaatttaagattttgcaactttcttcaccttcaacga 20320990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 8443 - 8576
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||| ||||||||| ||||||| | ||||||  ||||| ||||||||||||||||| ||||| || |||||||  |||||| |||||    
T  8443 attgttgtcaaaatccctacttaaatcctaaaatccacgattttgcgactttcttcaccttcaacgacttaaatctattgtagaatcccaaaat-aagca 8541  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||  ||||||| || ||||||||||||||    
T  8542 aaatccattgattttgattgcgattttacgatttc 8576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 93833 - 93702
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    ||||||||||||||||||||||||||| ||||||| || |  |||||| || ||||||| ||||| |||||||||||||| ||||||  ||||| | ||     
T  93833 attgttgtcaaaatcccgacttaaatcctaaaatccagaa--ttttgattttcttcaccctcaacaactcaaatccatagaagaattctaaaat-aggcg 93737  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    |||| |||| ||||||| || ||||||||||||||    
T  93736 aaatccatcgattttgattgcgattttacgatttc 93702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 47; Significance: 4e-18; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 218 - 96
Alignment:
Q  22 atcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagcaaaattcatcaat 121  Q
    ||||||||||||||| ||||||  ||||||||  ||||| |||||| ||||||||||||||||||||||| ||||  ||||||    ||||| |||| ||    
T  218 atcccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccatagtaaaattctaaaataggcgaaaatccatcgat 119  T
Q  122 tttgactgtgattttacgatttc 144  Q
    ||||| || |||||||| |||||    
T  118 tttgattgagattttacaatttc 96  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 9149 - 9070
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatag 89  Q
    |||||||||||||||| || ||||||  |||||| ||||||||| ||| ||  |||||||||||||||||||||||||||    
T  9149 attgttgtcaaaatcctgatttaaattttaaaatgtaggattttgtgattttattcaccttcaacgactcaaatccatag 9070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 7584 - 7451
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaatttcaaaataaagca 109  Q
    |||||||| | |||||||||||||||  ||||||  ||||||||  ||||| ||| |||||||||||   ||||||||||||||||   ||||| | |||    
T  7584 attgttgttagaatcccgacttaaattctaaaattcaggattttgcgactttctttaccttcaacgaacaaaatccatagtagaatcctaaaat-aggca 7486  T
Q  110 aaattcatcaattttgactgtgattttacgatttc 144  Q
    ||||||||| ||||| | || ||||||||||||||    
T  7485 aaattcatcgattttaattgcgattttacgatttc 7451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 48917 - 48839
Alignment:
Q  10 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccata 88  Q
    |||||||| ||||| |||||||||||| |||||||||| |||||   ||||  ||||||||||||||||||||||||||    
T  48917 attgttgtgaaaattccgacttaaatcctaaaatctagaattttgcaactttattcaccttcaacgactcaaatccata 48839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 61370 - 61323
Alignment:
Q  142 ttcatacaatatcgcaggattttaaagggttttgaagaattttatcca 189  Q
    ||||||||| | ||||||||||||| ||||||||||| ||||| ||||    
T  61370 ttcatacaaaaccgcaggattttaatgggttttgaaggattttgtcca 61323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University