View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254-Insertion-9 (Length: 519)
Name: NF1254-Insertion-9
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254-Insertion-9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 8 - 519
Target Start/End: Original strand, 4258801 - 4259312
Alignment:
| Q |
8 |
tctattcccaaactaagtgagattccctctgattttcatctactagagagccttgaaactctgcgtttggttaatatgccttatgagttcaaccaaagca |
107 |
Q |
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| T |
4258801 |
tctattcccaaactaagtgagattccctctgattttcatctactaaagagccttgaaactctgcgtttggttaatatgccttatgagttcaaccaaagca |
4258900 |
T |
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| Q |
108 |
ttgatccaaatggtggacccaagaactgggtcattgaacatgtgaaaatggtaactattgtagagaaggttggttcaaattctgtagacttcagctatcg |
207 |
Q |
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| T |
4258901 |
ttgatccaaatggtggaccgaagaactgggtcattgaacatgtgaaaatggtaactgttgtagagaaggttggttcaaattctgtagaattcagctatcg |
4259000 |
T |
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| Q |
208 |
cactattcatcatccaaggagtacatgaatcagaagttgaaaggtatcattttcgtctaattatatagcatatttgtatgtagtataatactttataatt |
307 |
Q |
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| T |
4259001 |
cactattcgtcatccaaggagtacatgaatcagaagttgaaaggtatcattttcgtctaattatatagcatatttgtatgtagtataatactttataatt |
4259100 |
T |
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| Q |
308 |
atcaaggcaaagtttgtcttctatattgcaatttttcatgagtttttggcgaagccacatgtttataaaattcttctgtaaagtagaatcattcatatat |
407 |
Q |
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| T |
4259101 |
atcaaggcaaagtttgtcttctatattgcaatttttcatgagtttttggcgaagccacatgtttataaaattcttctgtaaagtagaatcattcatatat |
4259200 |
T |
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| Q |
408 |
gtaactccctctcgttttgattttgctccatatatatttgtaggcttctcaatgtggatggaacttggaagtttcagattctcaatattttacagtttct |
507 |
Q |
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| T |
4259201 |
gtaactccctctcgttttgattttgctccatatatatttgtaggcttctcaatgtggatggaacttggaagtttcagattctcaatattttacagtttct |
4259300 |
T |
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| Q |
508 |
tcattcattcat |
519 |
Q |
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| T |
4259301 |
tcattcattcat |
4259312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 8 - 519
Target Start/End: Original strand, 4262423 - 4262934
Alignment:
| Q |
8 |
tctattcccaaactaagtgagattccctctgattttcatctactagagagccttgaaactctgcgtttggttaatatgccttatgagttcaaccaaagca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262423 |
tctattcccaaactaagtgagattccctctgattttcatctactaaagagccttgaaactctgcgtttggttaatatgccttatgagttcaaccaaagca |
4262522 |
T |
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| Q |
108 |
ttgatccaaatggtggacccaagaactgggtcattgaacatgtgaaaatggtaactattgtagagaaggttggttcaaattctgtagacttcagctatcg |
207 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4262523 |
ttgatccaaatggtggaccgaagaactgggtcattgaacatgtgaaaatggtaactgttgtagagaaggttggttcaaattctgtagaattcagctatcg |
4262622 |
T |
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| Q |
208 |
cactattcatcatccaaggagtacatgaatcagaagttgaaaggtatcattttcgtctaattatatagcatatttgtatgtagtataatactttataatt |
307 |
Q |
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| T |
4262623 |
cactattcgtcatccaaggagtacatgaatcagaagttgaaaggtatcattttcgtctaattatatagcatatttgtatgtagtataatactttataatt |
4262722 |
T |
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| Q |
308 |
atcaaggcaaagtttgtcttctatattgcaatttttcatgagtttttggcgaagccacatgtttataaaattcttctgtaaagtagaatcattcatatat |
407 |
Q |
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| T |
4262723 |
atcaaggcaaagtttgtcttctatattgcaatttttcatgagtttttggcgaagccacatgtttataaaattcttctgtaaagtagaatcattcatatat |
4262822 |
T |
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| Q |
408 |
gtaactccctctcgttttgattttgctccatatatatttgtaggcttctcaatgtggatggaacttggaagtttcagattctcaatattttacagtttct |
507 |
Q |
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| T |
4262823 |
gtaactccctctcgttttgattttgctccatatatatttgtaggcttctcaatgtggatggaacttggaagtttcagattctcaatattttacagtttct |
4262922 |
T |
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| Q |
508 |
tcattcattcat |
519 |
Q |
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|||||||||||| |
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| T |
4262923 |
tcattcattcat |
4262934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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