View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12540_high_10 (Length: 247)
Name: NF12540_high_10
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12540_high_10 |
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| [»] chr7 (4 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0596 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2991142 - 2990916
Alignment:
| Q |
1 |
tcatgaatggcatttttagagcgctcttcggtagaaacactcaaattctcattactttgagaacccatgtcttcttgatgcatggtatcaatacacacaa |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2991142 |
tcatgaatggcctttttagagcgctcttcggtagaaacactcaaattctcattactttgagcacccatgtcttcttgatgcatggtatcaatacacacaa |
2991043 |
T |
|
| Q |
101 |
cctctcgatcaacaatggttttcaaatcgttagcagattccaaatgagggttattatcgactcatgtttcagtgacattatttgtcacacaatcagtata |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2991042 |
cctctcgatcaataatggttttcaaatcgttagcagattccaaatgagggttattatcgactcatgtttcagtgacattatttgtcacacaatcagtata |
2990943 |
T |
|
| Q |
201 |
gttgattccttacccaaatcatccttc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
2990942 |
gttgattccttacccaaatcatccttc |
2990916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 7627439 - 7627682
Alignment:
| Q |
1 |
tcatgaatggcatttttagagcgctcttcggtagaaacactcaaattctcattactttgagaacccatgtcttcttgatgcatggtatcaata---caca |
97 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||| ||||||||| |||||| || ||||||||||||||||||| |||||||| | || |
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| T |
7627439 |
tcatgaatggcctttttagagcgctcttcgatagaaacactcaatttctcatta-tttgagcactcatgtcttcttgatgcatgatatcaatagtactca |
7627537 |
T |
|
| Q |
98 |
caacctctcgatcaacaatggttttcaaatcgttagcagattccaaatgagggttattatcgactcatgtttcagtgacattatttgtcacacaatcagt |
197 |
Q |
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||||||||| ||||||| | ||||||||| | ||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
7627538 |
caacctctccatcaacagttgttttcaaaaccttagcagattccaaatgtggattattgtcgacacatgtttcagtgacattatttgtcacacaat---- |
7627633 |
T |
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| Q |
198 |
atagttgattccttacccaaatcatccttccgaacaggaacatatttttt |
247 |
Q |
| |
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| |||| ||||| |||||||||||||||| |||| ||||||||||||| |
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| T |
7627634 |
-tcgttggttcctcacccaaatcatccttctaaacaagaacatatttttt |
7627682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 36708189 - 36707958
Alignment:
| Q |
1 |
tcatgaatggcatttttagagcgctcttcggtagaaacactcaaattctcattactttgagaacccatgtcttcttgatgcatggtatcaatacacacaa |
100 |
Q |
| |
|
||||||||| | |||||||||||||||| |||||||||||||||| ||| |||| ||||| ||||||| |||||| ||||| ||||||||||| ||||| |
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| T |
36708189 |
tcatgaatgacctttttagagcgctctttagtagaaacactcaaatgctctttacattgagcacccatgacttcttcatgcacggtatcaatactcacaa |
36708090 |
T |
|
| Q |
101 |
cctctcgatcaacaatggttttcaaatcgttagcagattccaaatgagggttattatcgactcatgtttcagtgacattatttgtcacacaatcagtata |
200 |
Q |
| |
|
|||||| ||||||| ||||||||||| | |||||||||||||||||||| ||| ||||| |||||||||||||||||| |||||| |
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| T |
36708089 |
cctctccatcaacattggttttcaaaac---------ttccaaatgagggttattatggacacatgtaacagtgacattatttgtcaaacaatc-----g |
36708004 |
T |
|
| Q |
201 |
gttgattccttacccaaatcatccttccgaacaggaacatattttt |
246 |
Q |
| |
|
|||| |||||| || ||| |||||||| |||||||||||| ||||| |
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| T |
36708003 |
gttggttcctttccgaaaacatccttctgaacaggaacattttttt |
36707958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 23279526 - 23279696
Alignment:
| Q |
1 |
tcatgaatggcatttttagagcgctcttcggtagaaacactcaaattctcattactttgagaacccatgtcttcttgatgcatggtatcaatacacacaa |
100 |
Q |
| |
|
|||| |||||| |||||||||| || ||| ||||||||||||||||| ||||||||||||| || |||||||||||| ||||||||||||||| |||| |
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| T |
23279526 |
tcataaatggcctttttagagcactattccgtagaaacactcaaattatcattactttgagcacatatgtcttcttgaggcatggtatcaataccaacaa |
23279625 |
T |
|
| Q |
101 |
cctctcgatcaacaatggttttcaaatcgttagcagattccaaatgagggttattatcgactcatgtttca |
171 |
Q |
| |
|
|||||| |||||| ||||||||||| | || || ||| ||||||| | ||||| ||||| ||||||||| |
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|
| T |
23279626 |
cctctccatcaacggtggttttcaaaacattcacatatttcaaatgatgattattgtcgacacatgtttca |
23279696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 23280946 - 23281015
Alignment:
| Q |
173 |
tgacattatttgtcacacaatcagtatagttgattccttacccaaatcatccttccgaacaggaacatatttttt |
247 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| ||||||||||||||| ||||| |||||| |||||| |
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| T |
23280946 |
tgacattatttgtcacacaatcagt-----tggttcctttcccaaatcatccttctgaacaagaacatgtttttt |
23281015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 26303628 - 26303387
Alignment:
| Q |
1 |
tcatgaatggcatttttagagcgctcttcggtagaaacactcaaattctcattactttgagaacccatgtcttcttgatgcatggtatcaatacacacaa |
100 |
Q |
| |
|
|||| |||||| |||||||| | ||||| ||||||||||| ||||||||||||||||||| || |||||||||||| ||||| |||||||| ||||| |
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| T |
26303628 |
tcataaatggcctttttagatcactcttaagtagaaacactgaaattctcattactttgagcacatatgtcttcttgaggcatgacatcaatactcacaa |
26303529 |
T |
|
| Q |
101 |
cctctcgatcaacaatggttttcaaatcgttagcagattccaaatgagggttattatcgactcatgtttcagtgacattatttgtcacacaatcagtata |
200 |
Q |
| |
|
||| || ||||||| ||| ||||||| | || ||||||| ||||||| | ||||| ||||| ||||||||| ||||||||||||| |||| |||||| |
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|
| T |
26303528 |
cctttccatcaacagtggatttcaaaacattcgcagatttcaaatgatgattattgtcgacacatgtttcaatgacattatttgtgacacgatcagt--- |
26303432 |
T |
|
| Q |
201 |
gttgattccttacccaaatcatccttccgaacaggaacatatttttt |
247 |
Q |
| |
|
|| |||||| ||||||||||| ||| |||| |||||| |||||| |
|
|
| T |
26303431 |
--tggttcctttcccaaatcatcattctgaactagaacatgtttttt |
26303387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 41799657 - 41799702
Alignment:
| Q |
38 |
cactcaaattctcattactttgagaacccatgtcttcttgatgcat |
83 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||||||||| ||||||| |
|
|
| T |
41799657 |
cactcaaattctcattaccttgagcaaccatgtcttctggatgcat |
41799702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 27623761 - 27623881
Alignment:
| Q |
4 |
tgaatggcatttttagagcgctcttcggtagaaacactcaaattctcattactttgagaacccatgtcttcttgatgcatggtatcaatacacacaacct |
103 |
Q |
| |
|
||||| || |||||||| |||||||| ||||||||||||||||||| |||| ||| | ||||||||| ||| |||| | ||||||| ||| ||||| | |
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|
| T |
27623761 |
tgaatagcctttttagaccgctcttcagtagaaacactcaaattcttgttaccttgggcacccatgtcatctagatgtaaggtatcattacttacaactt |
27623860 |
T |
|
| Q |
104 |
ctcgatcaacaatggttttca |
124 |
Q |
| |
|
| | ||||||||||||||||| |
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|
| T |
27623861 |
ccccatcaacaatggttttca |
27623881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 14097636 - 14097748
Alignment:
| Q |
1 |
tcatgaatggcatttttagagcgctcttcggtagaaacactcaaattctcattactttgagaacccatgtcttcttgatgcatggtatcaatacacacaa |
100 |
Q |
| |
|
|||||||| || |||||| | ||||||| ||||||||||||||||||||||||| | | ||||||||| ||| |||||| ||||||||||| ||| | |
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|
| T |
14097636 |
tcatgaatagcctttttacaatgctcttcagtagaaacactcaaattctcattaccgttggcacccatgtcatctggatgcaaggtatcaatactcacta |
14097735 |
T |
|
| Q |
101 |
cctctcgatcaac |
113 |
Q |
| |
|
| |||| |||||| |
|
|
| T |
14097736 |
cttctccatcaac |
14097748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 2429 - 2540
Alignment:
| Q |
13 |
tttttagagcgctcttcggtagaaacactcaaattctcattactttgagaacccatgtcttcttgatgcatggtatcaatacacacaacctctcgatcaa |
112 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| |||||||||| | | |||| |||| ||| |||||| ||||||||| | |||||| |||| ||||| |
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|
| T |
2429 |
tttttacaacgctcttcggtagaaacactcaacttctcattaccgttggcacccgtgtcatctggatgcaaggtatcaatgctcacaacttctccatcaa |
2528 |
T |
|
| Q |
113 |
caatggttttca |
124 |
Q |
| |
|
|| ||| ||||| |
|
|
| T |
2529 |
cagtggctttca |
2540 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 42110642 - 42110687
Alignment:
| Q |
38 |
cactcaaattctcattactttgagaacccatgtcttcttgatgcat |
83 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||||||||| ||||||| |
|
|
| T |
42110642 |
cactcaaattctcattaccttgagcaaccatgtcttctggatgcat |
42110687 |
T |
|
Back To:
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