View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12540_high_12 (Length: 225)
Name: NF12540_high_12
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12540_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 33556259 - 33556456
Alignment:
| Q |
18 |
agcagatcaacactaatagaaacatcaacattacaatcacaataacaattttcagtaaggactctctccaacataattcccaggtggataatagaaacaa |
117 |
Q |
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| T |
33556259 |
agcagatcaacactaatagaaacatcaacattacaatcacaacaacaattttcagtaaggactctctccaacataattcccaggtggataatagaaacaa |
33556358 |
T |
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| Q |
118 |
atactcaaactagtatcttccttaccacaagtagtttgagcacacccaagttcaacactcttcctccaaacaacttgagtataaacaccacacctatg |
215 |
Q |
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| T |
33556359 |
atactcaaactagtatcttccttaccacaagtagtttgagcacacccaagttcaacactcttcctccaaacaacttgagtataaacaccacacctatg |
33556456 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 7013427 - 7013373
Alignment:
| Q |
76 |
ggactctctccaacataattcccaggtggataatagaaacaaatactcaaactag |
130 |
Q |
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| T |
7013427 |
ggactctctccaataacattaccaggtggatcatagaaacaaatagtcaaactag |
7013373 |
T |
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