View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12540_high_13 (Length: 224)
Name: NF12540_high_13
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12540_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 42798812 - 42798620
Alignment:
| Q |
17 |
gttcatacattactctgcgtaacataattaacaacagtctctctcacaatccacacataactccactgctttaaaacctgtactctttgcaagtcgcaac |
116 |
Q |
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| T |
42798812 |
gttcatacattactctgcgtaacataattaacaacagtctctctcacaatccacacataactccactgctttaaaacctgtactctttgcaagtcgcaac |
42798713 |
T |
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| Q |
117 |
ccttctaaaactccccacaattctgcctcaagctccactcaacggcccatgttaaacattttgaaaagcaacagatccagttactgtgattat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798712 |
ccttctaaaactccccacaattctgcctcaagctccactcaacggcccatgttaaacattttgaaaagcaacagatccagttactgtgattat |
42798620 |
T |
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