View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12540_high_14 (Length: 221)
Name: NF12540_high_14
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12540_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 17702752 - 17702558
Alignment:
| Q |
10 |
gaagcagagaaaataaaagttttattaggccactcatgaaattttttacatgaaatttgagttaaaatgctacaagctgtgattggacattcattatggt |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17702752 |
gaagcaaagaaaataaaagttttattaggacactcatgaaattttttacatgaaatttgagttaaaatgctacaagctgtgattggacattcattattgt |
17702653 |
T |
|
| Q |
110 |
cctaaccttgatttactatctcacacaatctgaaataatgaatcattttggcatataagatgatcttgctagctatataaacatttccctatggt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
17702652 |
cctaaccttgatttactatctcacacaatctgaaataatgaatcattttggcatataagatgatcttgccagctatataaacattttcctatggt |
17702558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 17684483 - 17684441
Alignment:
| Q |
58 |
catgaaatttgagttaaaatgctacaagctgtgattggacatt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17684483 |
catgaaatttgagttaaaatgttacaagctgtgattggacatt |
17684441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 14626745 - 14626944
Alignment:
| Q |
10 |
gaagcagagaaaataaaagttttattaggccactcatgaaattttttacatgaaatttgagttaaaatgctacaagctgtgattggacattcattatggt |
109 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14626745 |
gaagcaaagaaaataaatgttttattaggacactcatgaaatattttacatgaaatttgagttaaaatgctacaagctgtgattggacattcattattgt |
14626844 |
T |
|
| Q |
110 |
cctaaccttgatttactatctcacacaatctgaaataatgaatcattttggcatataagatgatcttgctagctatataaacatttccctatggtgatgt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
14626845 |
cctaaccttgatttactatctcacacaatctgaaataatgaatcattttggcatataagatgatcttgctagctatataaacattttcctatggttatgt |
14626944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University