View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12540_high_2 (Length: 465)
Name: NF12540_high_2
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12540_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 6 - 406
Target Start/End: Complemental strand, 21121022 - 21120622
Alignment:
| Q |
6 |
actgacaccaaccaacactaacatgccgccaccgataataattcgagaaaatgtcatagctataatacagcaatctaaaataaaatagttaaagttacag |
105 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21121022 |
actgacaccaaccaacactaacatgccgacaccgataataattcgagaaaatgtcatagctataatacagcaatctaaaataaaatagttaaagttacag |
21120923 |
T |
|
| Q |
106 |
ttatggtaccttcttagtacgggttctaatctcggatttacgagctttgttgtaaacgcgacgcctctcagcctgaagagctttcttaatggcggaatca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21120922 |
ttatggtaccttcttagtacgggttctaatctcggatttacgagctttgttgtaaacgcgacgcctctcagcctgaagagctttcttaatggcggaatca |
21120823 |
T |
|
| Q |
206 |
accttctttggagcagcctcgcaaacaacaacaacaccacgcctctggaccgtattcaaagagaacgtaccttgtgaaaggactctagattgggaaatgt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21120822 |
accttctttggagcagcctcgcaaacaacaacaacaccacgcctctggaccgtattcaaagagaacgtaccttgtgaaaggactctagattgggaaatgt |
21120723 |
T |
|
| Q |
306 |
ttcgggagaaacttagtgaaccggaatttgatgatgaagttagggtaaggttcttcattttcgaaggaaggttcaacaatgaacatgaaactgaagccat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21120722 |
ttcgggagaaacttagtgaaccggaatttgatgatgaagttagggtaaggttcttcattttcgaaggaaggttcaacaatgaacatgaaactgaagccat |
21120623 |
T |
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| Q |
406 |
a |
406 |
Q |
| |
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| T |
21120622 |
a |
21120622 |
T |
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