View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12540_high_3 (Length: 352)
Name: NF12540_high_3
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12540_high_3 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 10378508 - 10378170
Alignment:
| Q |
14 |
acaacttggttgatgttatttggtggtactctctccccacatttatt-agagatgagcaaggtggtagaggatggggcagccgtcgagtgccaacctagt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10378508 |
acaacttggttgatgttatttggtggtactctctccccacatttatttagagatgagcaacgtggtagaggatggggcagccgtcgagtgccaacctagt |
10378409 |
T |
|
| Q |
113 |
taggatttaaaactatctcctcatgattttgtttgcttttgattcagcnnnnnnnnnnnnnttaactaaaacatacattaactattcatgcttcatttta |
212 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10378408 |
taggatttcaaactatctcctcatgattttgtttgcttttgattcagcaaaaaaaaaaaa-ttaactaaaacatacattaactattcatgcttcatttta |
10378310 |
T |
|
| Q |
213 |
gggttgcatttatattgtcgatacatacaaagtctattggtcaagtggtgtcaaaggagttcacgccggaaagatggttctacacttggttgaagcaatt |
312 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10378309 |
gggttgcgtttatattgtcgatacatacaaagtctattggtcaagtggtgtcaaaggagttcacgccggaaagatggttctacacttggttgaagcaatt |
10378210 |
T |
|
| Q |
313 |
gggaagaatattattctccatcattatctaaacaaagaac |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10378209 |
gggaagaatattattctccatcattatctaaacaaagaac |
10378170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 195 - 339
Target Start/End: Complemental strand, 10365879 - 10365736
Alignment:
| Q |
195 |
tattcatgcttcattttagggttgcatttatattgtcgatacatacaaagtctattggtcaagtggtgtcaaaggagttcacgccggaaagatggttcta |
294 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10365879 |
tattcatgct-cattttagggttgcgtttatattgtcgatgcatacaaagtttattggtcaagttgtgtcaaaggagttcacaccggaaagatggttcta |
10365781 |
T |
|
| Q |
295 |
cacttggttgaagcaattgggaagaatattattctccatcattat |
339 |
Q |
| |
|
| | ||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
10365780 |
cgcctggttgaagcagttggtaaaaatattattctccatcattat |
10365736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 236 - 339
Target Start/End: Original strand, 10136458 - 10136561
Alignment:
| Q |
236 |
catacaaagtctattggtcaagtggtgtcaaaggagttcacgccggaaagatggttctacacttggttgaagcaattgggaagaatattattctccatca |
335 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10136458 |
catacaaagtctattggtcaagctgtgtcaaaggagttcacaccggaaagatggttctacgcctggttgaagcaattggtaagaatattattctccatca |
10136557 |
T |
|
| Q |
336 |
ttat |
339 |
Q |
| |
|
|||| |
|
|
| T |
10136558 |
ttat |
10136561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 339
Target Start/End: Original strand, 10133837 - 10133940
Alignment:
| Q |
236 |
catacaaagtctattggtcaagtggtgtcaaaggagttcacgccggaaagatggttctacacttggttgaagcaattgggaagaatattattctccatca |
335 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| | | |||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
10133837 |
catacaaagtctattggtcaagctgtgtcaaaggagttcacaccggaaatatggttttgcgtctggtcgaagcaattggtaagaatattattctccatca |
10133936 |
T |
|
| Q |
336 |
ttat |
339 |
Q |
| |
|
|||| |
|
|
| T |
10133937 |
ttat |
10133940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 10212920 - 10213016
Alignment:
| Q |
236 |
catacaaagtctattggtcaagtggtgtcaaaggagttcacgccggaaagatggttctacacttggttgaagcaattgggaagaatattattctcca |
332 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | |||| ||||||||||| |||||||||||| |||| |
|
|
| T |
10212920 |
catacaaagtctattggtcaagctgtgtcaaaggagttcactccggaaagatggttctgcctctggtcgaagcaattggtaagaatattattatcca |
10213016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 10101997 - 10102093
Alignment:
| Q |
236 |
catacaaagtctattggtcaagtggtgtcaaaggagttcacgccggaaagatggttctacacttggttgaagcaattgggaagaatattattctcca |
332 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||| || |||||||| |||||||||||| |||| |
|
|
| T |
10101997 |
catacaaagtctattggtcaagctgtgtcaaaggagttcactccggaaagatggttctgcctcaggtcgacgcaattggtaagaatattattatcca |
10102093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 314
Target Start/End: Original strand, 25793300 - 25793409
Alignment:
| Q |
205 |
tcattttagggttgcatttatattgtcgatacatacaaagtctattggtcaagtggtgtcaaaggagttcacgccggaaagatggttctacacttggttg |
304 |
Q |
| |
|
||||||||||| || |||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||| | | |||| |
|
|
| T |
25793300 |
tcattttagggctgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttg |
25793399 |
T |
|
| Q |
305 |
aagcaattgg |
314 |
Q |
| |
|
|||||||||| |
|
|
| T |
25793400 |
aagcaattgg |
25793409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 31326570 - 31326521
Alignment:
| Q |
17 |
acttggttgatgttatttggtggtactctctccccacatttattagagat |
66 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
31326570 |
acttggctgatgttatttggtgagactctctccgcacatttattagagat |
31326521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University