View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12540_high_4 (Length: 345)
Name: NF12540_high_4
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12540_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 335
Target Start/End: Complemental strand, 37292188 - 37291865
Alignment:
| Q |
12 |
atcataacaaagacgactaaacgtagccaataattgcctacgtctcgaaacaattgcaaagaagatcttcttattagaacaagacattgagtggtaaatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37292188 |
atcataacaaagacgactaaacgtagccaataattgcctacgtctcgaaacaattgcaaagaagatcttcttattagaacaagacattgagtggtaaatg |
37292089 |
T |
|
| Q |
112 |
caccatgaatcctcttcttccctattgcaccagagtcctaaaatcatgcaaatcttagtgtgagggaaaaattcttagattcatatatagttctcttgtt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37292088 |
caccatgaatcctcttcttccctattgcaccagagtcctaaaatcatgcaaatcttagtgtgagggaaaaattcttagattcatatatagttctcttgtt |
37291989 |
T |
|
| Q |
212 |
tttggcaaaattctcttgtaacatgaaacttacacttttacttataatttccacnnnnnnnnnaacttgggttctaatttgagatgatctataagacttt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37291988 |
tttggcaaaattctcttgtaacatgaaacttacacttttacttataatttccactttttttttaacttgggttctaatttgagatgatctataagacttt |
37291889 |
T |
|
| Q |
312 |
acaaggataccaattgcttcttct |
335 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
37291888 |
acaaggataccaattgcttcttct |
37291865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University