View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12540_low_1 (Length: 644)

Name: NF12540_low_1
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12540_low_1
NF12540_low_1
[»] chr6 (1 HSPs)
chr6 (18-644)||(14734985-14735598)


Alignment Details
Target: chr6 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 18 - 644
Target Start/End: Original strand, 14734985 - 14735598
Alignment:
Q  18 aagtggcgcaccggaaattgattagtaagaagtttaaggaatacgcaaattcttggaccttggaataggagtttcatatatgagataggataagtagcgg 117  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||| |    
T  14734985 aagtggcgcagtggaaattgattagtaagaagtttaaggaatacgcaaattcttggaccttggaataggagtttcat----gagataggataagtagccg 14735080  T
Q  118 ttagtcaagcgcttagccatttctagtgagaagtattgagagatgagcaagaaattcttgaagcaccaggttcaaaatgatgggactcgagtaaaattgg 217  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14735081 ttagtcaagcggttagccatttctagtgagaagtattgagagatgagtaagaaattcttgaagcaccaggttcaaaatgatgggactcgagtaaaactgg 14735180  T
Q  218 aatcaccactggtatggtctttgattttcttagttcactgactttaagtataaacaaaaaatgtcagccggttagaaaagagttcggtgtgagacaacgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14735181 aatcaccactggtatggtctttgattttcttagttcactgactttaagtataaacaaaaaatgtcagccggttagaaaagagttcggtgtgag-caacgt 14735279  T
Q  318 ggttttctaagttttgtgtagacgtgattatctccacaactctatgttttgcttgattaacttgttaattcttgccataatgatgaattaagg---ttac 414  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  14735280 ggttttctaagttttgtgtagatgtgattatctccacaactctatgttttgcttgattaacttgttaattcttgccataatgatgaattaaggtgtttac 14735379  T
Q  415 gtgatttctagactcgatacgtgcatttgggtacttggaattgatgttttgagctaagatacgaattctacaggtcctgctctgtcctaactcgcttaaa 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14735380 gtgatttctagactcgatacgtgcatttgggtacttggaattgatgttttgagctaagatacgaattctacaggtcctgctctgtcctaactcgcttaaa 14735479  T
Q  515 gcaagctaaactgacctggagcgggtaaactccagagagaactagcctgaagcgagtcaggagcgagtaactagcttataactcgcatggagtgagtttt 614  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||           |||||||||||||||||||||||||||||||||||||||    
T  14735480 gcaagctaaactgacctggagcgagtaaactccagagagaactcgcctga-----------agcgagtaactagcttataactcgcatggagtgagtttt 14735568  T
Q  615 gacagcacagttgtgttgtcgacttgttcc 644  Q
    |||||||||||||||||||||||| |||||    
T  14735569 gacagcacagttgtgttgtcgactcgttcc 14735598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University